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    ablim3 actin binding LIM protein family member 3 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100494921, updated on 4-Nov-2024

    Summary

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    Official Symbol
    ablim3provided by Xenbase
    Official Full Name
    actin binding LIM protein family member 3provided by Xenbase
    Primary source
    Xenbase:XB-GENE-494311
    See related
    Ensembl:ENSXETG00000030469 AllianceGenome:Xenbase:XB-GENE-494311
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Summary
    Predicted to enable actin binding activity and metal ion binding activity. Predicted to act upstream of or within cytoskeleton organization. Predicted to be located in cytoplasm. [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See ablim3 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 3 NC_030679.2 (40560916..40692582, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 3 NC_030679.1 (31488719..31621520)

    Chromosome 3 - NC_030679.2Genomic Context describing neighboring genes Neighboring gene GrpE like 2, mitochondrial Neighboring gene uncharacterized LOC116409716 Neighboring gene actin filament associated protein 1 like 1 Neighboring gene SH3 domain and tetratricopeptide repeats 2 Neighboring gene adrenoceptor beta 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables actin binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within cytoskeleton organization IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    actin-binding LIM protein 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030679.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      40560916..40692582 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018092201.2 → XP_017947690.1  actin-binding LIM protein 3 isoform X2

      UniProtKB/TrEMBL
      A0A6I8QWN4, A0A8J0T157
      Related
      ENSXETP00000084096.2, ENSXETT00000076088.2
      Conserved Domains (6) summary
      smart00153
      Location:619 → 654
      VHP; Villin headpiece domain
      cd09327
      Location:22 → 73
      LIM1_abLIM; The first LIM domain of actin binding LIM (abLIM) proteins
      cd09328
      Location:78 → 133
      LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
      cd09329
      Location:150 → 201
      LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
      cd09330
      Location:209 → 264
      LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins
      pfam16182
      Location:273 → 617
      AbLIM_anchor; Putative adherens-junction anchoring region of AbLIM

    2. XM_031898816.1 → XP_031754676.1  actin-binding LIM protein 3 isoform X5

      UniProtKB/TrEMBL
      A0A6I8QWN4, A0A8J1JDG5
      Related
      ENSXETP00000099169.2, ENSXETT00000095113.2
      Conserved Domains (6) summary
      smart00153
      Location:596 → 631
      VHP; Villin headpiece domain
      cd09327
      Location:22 → 73
      LIM1_abLIM; The first LIM domain of actin binding LIM (abLIM) proteins
      cd09328
      Location:78 → 133
      LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
      cd09329
      Location:150 → 201
      LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
      cd09330
      Location:209 → 264
      LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins
      pfam16182
      Location:273 → 595
      AbLIM_anchor; Putative adherens-junction anchoring region of AbLIM

    3. XM_004912838.3 → XP_004912895.1  actin-binding LIM protein 3 isoform X4

      UniProtKB/TrEMBL
      A0A6I8QWN4, A0A8J0QZQ9
      Related
      ENSXETP00000106697.1, ENSXETT00000114936.1
      Conserved Domains (6) summary
      smart00153
      Location:612 → 647
      VHP; Villin headpiece domain
      cd09327
      Location:22 → 73
      LIM1_abLIM; The first LIM domain of actin binding LIM (abLIM) proteins
      cd09328
      Location:78 → 133
      LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
      cd09329
      Location:150 → 201
      LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
      cd09330
      Location:209 → 264
      LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins
      pfam16182
      Location:273 → 610
      AbLIM_anchor; Putative adherens-junction anchoring region of AbLIM

    4. XM_012959788.3 → XP_012815242.1  actin-binding LIM protein 3 isoform X3

      UniProtKB/TrEMBL
      A0A6I8QWN4, A0A8J0SJL4
      Conserved Domains (6) summary
      smart00153
      Location:617 → 652
      VHP; Villin headpiece domain
      cd09327
      Location:22 → 73
      LIM1_abLIM; The first LIM domain of actin binding LIM (abLIM) proteins
      cd09328
      Location:78 → 133
      LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
      cd09329
      Location:150 → 201
      LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
      cd09330
      Location:209 → 264
      LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins
      pfam16182
      Location:273 → 615
      AbLIM_anchor; Putative adherens-junction anchoring region of AbLIM

    5. XM_004912837.3 → XP_004912894.1  actin-binding LIM protein 3 isoform X1

      UniProtKB/TrEMBL
      A0A6I8PXT5, A0A6I8SVD3
      Related
      ENSXETP00000059084.3, ENSXETT00000065875.3
      Conserved Domains (6) summary
      smart00153
      Location:629 → 664
      VHP; Villin headpiece domain
      cd09327
      Location:22 → 73
      LIM1_abLIM; The first LIM domain of actin binding LIM (abLIM) proteins
      cd09328
      Location:78 → 133
      LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
      cd09329
      Location:150 → 201
      LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
      cd09330
      Location:209 → 264
      LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins
      pfam16182
      Location:273 → 627
      AbLIM_anchor; Putative adherens-junction anchoring region of AbLIM

    6. XM_031898818.1 → XP_031754678.1  actin-binding LIM protein 3 isoform X9

      UniProtKB/TrEMBL
      A0A6I8QWN4, A0A8J1J9Y6
      Conserved Domains (6) summary
      smart00153
      Location:544 → 579
      VHP; Villin headpiece domain
      cd09327
      Location:22 → 73
      LIM1_abLIM; The first LIM domain of actin binding LIM (abLIM) proteins
      cd09328
      Location:78 → 133
      LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
      cd09329
      Location:150 → 201
      LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
      cd09330
      Location:209 → 264
      LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins
      pfam16182
      Location:273 → 543
      AbLIM_anchor; Putative adherens-junction anchoring region of AbLIM

    7. XM_018092203.2 → XP_017947692.1  actin-binding LIM protein 3 isoform X8

      UniProtKB/TrEMBL
      A0A6I8QNM8, A0A8J0T2F3
      Related
      ENSXETP00000070890.2, ENSXETT00000095715.2

    8. XM_031898817.1 → XP_031754677.1  actin-binding LIM protein 3 isoform X7

      UniProtKB/TrEMBL
      A0A6I8QWN4, A0A8J1J9X8
      Related
      ENSXETP00000114776.1, ENSXETT00000112997.1
      Conserved Domains (6) summary
      smart00153
      Location:579 → 614
      VHP; Villin headpiece domain
      cd09327
      Location:22 → 73
      LIM1_abLIM; The first LIM domain of actin binding LIM (abLIM) proteins
      cd09328
      Location:78 → 133
      LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
      cd09329
      Location:150 → 201
      LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
      cd09330
      Location:209 → 264
      LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins
      pfam16182
      Location:273 → 578
      AbLIM_anchor; Putative adherens-junction anchoring region of AbLIM

    9. XM_004912839.3 → XP_004912896.1  actin-binding LIM protein 3 isoform X6

      UniProtKB/TrEMBL
      A0A6I8QWN4, A0A8J0QXN0
      Related
      ENSXETP00000073579.2, ENSXETT00000098937.2
      Conserved Domains (6) summary
      smart00153
      Location:584 → 619
      VHP; Villin headpiece domain
      cd09327
      Location:22 → 73
      LIM1_abLIM; The first LIM domain of actin binding LIM (abLIM) proteins
      cd09328
      Location:78 → 133
      LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
      cd09329
      Location:150 → 201
      LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
      cd09330
      Location:209 → 264
      LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins
      pfam16182
      Location:273 → 582
      AbLIM_anchor; Putative adherens-junction anchoring region of AbLIM

    10. XM_012959794.3 → XP_012815248.1  actin-binding LIM protein 3 isoform X10

      UniProtKB/TrEMBL
      A0A6I8QWN4, A0A8J0SJM6
      Conserved Domains (6) summary
      smart00153
      Location:532 → 567
      VHP; Villin headpiece domain
      cd09327
      Location:22 → 73
      LIM1_abLIM; The first LIM domain of actin binding LIM (abLIM) proteins
      cd09328
      Location:78 → 133
      LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
      cd09329
      Location:150 → 201
      LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
      cd09330
      Location:209 → 264
      LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins
      pfam16182
      Location:273 → 531
      AbLIM_anchor; Putative adherens-junction anchoring region of AbLIM
    Nucleotide Protein Strain
    Heading Accession and Version

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