U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    slitrk5 SLIT and NTRK like family member 5 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100494014, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    slitrk5provided by Xenbase
    Official Full Name
    SLIT and NTRK like family member 5provided by Xenbase
    Primary source
    Xenbase:XB-GENE-6034846
    See related
    Ensembl:ENSXETG00000023987
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See slitrk5 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 2 NC_030678.2 (123929847..123936819, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 2 NC_030678.1 (120578496..120585039, complement)

    Chromosome 2 - NC_030678.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116408873 Neighboring gene microRNA mir-18a Neighboring gene microRNA mir-17 Neighboring gene SLIT and NTRK like family member 6 Neighboring gene SLIT and NTRK like family member 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by Xenbase

    Process Evidence Code Pubs
    acts_upstream_of_or_within axonogenesis IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within regulation of presynapse assembly IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    SLIT and NTRK-like protein 5

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      123929847..123936819 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002940106.5 → XP_002940152.1  SLIT and NTRK-like protein 5

      See identical proteins and their annotated locations for XP_002940152.1

      UniProtKB/TrEMBL
      A0A803KC04, F6QDA1
      Conserved Domains (5) summary
      smart00082
      Location:559 → 595
      LRRCT; Leucine rich repeat C-terminal domain
      COG4886
      Location:98 → 256
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:83 → 106
      LRR_RI; leucine-rich repeat [structural motif]
      pfam13855
      Location:430 → 489
      LRR_8; Leucine rich repeat
      NF033189
      Location:429 → 561
      internalin_A; class 1 internalin InlA

    2. XM_004911826.3 → XP_004911883.1  SLIT and NTRK-like protein 5

      See identical proteins and their annotated locations for XP_004911883.1

      UniProtKB/TrEMBL
      A0A803KC04, F6QDA1
      Related
      ENSXETP00000047546.5, ENSXETT00000047546.6
      Conserved Domains (5) summary
      smart00082
      Location:559 → 595
      LRRCT; Leucine rich repeat C-terminal domain
      COG4886
      Location:98 → 256
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:83 → 106
      LRR_RI; leucine-rich repeat [structural motif]
      pfam13855
      Location:430 → 489
      LRR_8; Leucine rich repeat
      NF033189
      Location:429 → 561
      internalin_A; class 1 internalin InlA
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.