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    atxn1 ataxin 1 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100492711, updated on 17-Aug-2024

    Summary

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    Official Symbol
    atxn1provided by Xenbase
    Official Full Name
    ataxin 1provided by Xenbase
    Primary source
    Xenbase:XB-GENE-982144
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    atx1
    Orthologs
    human mouse all
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    Genomic context

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    See atxn1 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 6 NC_030682.2 (93272300..93444516)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 6 NC_030682.1 (48246248..48423780, complement)

    Chromosome 6 - NC_030682.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101733088 Neighboring gene stathmin domain containing 1 Neighboring gene guanosine monophosphate reductase Neighboring gene DEK proto-oncogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    ataxin-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030682.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      93272300..93444516
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002932692.5 → XP_002932738.1  ataxin-1

      See identical proteins and their annotated locations for XP_002932738.1

      UniProtKB/TrEMBL
      A0A8J0SQN8, F6PW06
      Conserved Domains (2) summary
      pfam08517
      Location:557 → 668
      AXH; Ataxin-1 and HBP1 module (AXH)
      pfam12547
      Location:382 → 426
      ATXN-1_C; Capicua transcriptional repressor modulator

    2. XM_031903742.1 → XP_031759602.1  ataxin-1

      UniProtKB/TrEMBL
      A0A8J0SQN8, F6PW06
      Conserved Domains (2) summary
      pfam08517
      Location:557 → 668
      AXH; Ataxin-1 and HBP1 module (AXH)
      pfam12547
      Location:382 → 426
      ATXN-1_C; Capicua transcriptional repressor modulator

    3. XM_004915283.4 → XP_004915340.1  ataxin-1

      See identical proteins and their annotated locations for XP_004915340.1

      UniProtKB/TrEMBL
      A0A8J0SQN8, F6PW06
      Conserved Domains (2) summary
      pfam08517
      Location:557 → 668
      AXH; Ataxin-1 and HBP1 module (AXH)
      pfam12547
      Location:382 → 426
      ATXN-1_C; Capicua transcriptional repressor modulator

    4. XM_012965401.3 → XP_012820855.1  ataxin-1

      See identical proteins and their annotated locations for XP_012820855.1

      UniProtKB/TrEMBL
      A0A8J0SQN8, F6PW06
      Conserved Domains (2) summary
      pfam08517
      Location:557 → 668
      AXH; Ataxin-1 and HBP1 module (AXH)
      pfam12547
      Location:382 → 426
      ATXN-1_C; Capicua transcriptional repressor modulator
    Nucleotide Protein Strain
    Heading Accession and Version

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