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    zc3h12c zinc finger CCCH-type containing 12C [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100490495, updated on 17-Aug-2024

    Summary

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    Official Symbol
    zc3h12cprovided by Xenbase
    Official Full Name
    zinc finger CCCH-type containing 12Cprovided by Xenbase
    Primary source
    Xenbase:XB-GENE-6045328
    See related
    Ensembl:ENSXETG00000033837
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Orthologs
    human mouse all
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    Genomic context

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    See zc3h12c in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 2 NC_030678.2 (159168824..159187505, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 2 NC_030678.1 (156075436..156096286, complement)

    Chromosome 2 - NC_030678.2Genomic Context describing neighboring genes Neighboring gene EEF1A lysine methyltransferase 1 Neighboring gene exportin 4 Neighboring gene uncharacterized LOC116408715 Neighboring gene ouroboros 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables endonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    probable ribonuclease ZC3H12C

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      159168824..159187505 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002937961.5 → XP_002938007.2  probable ribonuclease ZC3H12C

      UniProtKB/TrEMBL
      F6SI66
      Related
      ENSXETP00000038586.4, ENSXETT00000038586.5
      Conserved Domains (4) summary
      cd18729
      Location:251 → 381
      PIN_Zc3h12-like; PRORP-like PIN domain of ribonuclease Zc3h12a and related proteins
      pfam18039
      Location:165 → 206
      UBA_6; UBA-like domain
      pfam18044
      Location:418 → 436
      zf-CCCH_4; CCCH-type zinc finger
      pfam18561
      Location:839 → 879
      Regnase_1_C; Endoribonuclease Regnase 1/ ZC3H12 C-terminal domain
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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