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    bcdin3d BCDIN3 domain containing RNA methyltransfease [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100489630, updated on 17-Aug-2024

    Summary

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    Official Symbol
    bcdin3dprovided by Xenbase
    Official Full Name
    BCDIN3 domain containing RNA methyltransfeaseprovided by Xenbase
    Primary source
    Xenbase:XB-GENE-5859380
    See related
    Ensembl:ENSXETG00000040078
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 2 NC_030678.2 (148254546..148257111, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 2 NC_030678.1 (145384562..145387135, complement)

    Chromosome 2 - NC_030678.2Genomic Context describing neighboring genes Neighboring gene keratin 7 Neighboring gene keratin 80, type II Neighboring gene Fas apoptotic inhibitory molecule 2 Neighboring gene aquaporin-2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables O-methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables RNA methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within methylation IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    RNA 5'-monophosphate methyltransferase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      148254546..148257111 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002935731.5 → XP_002935777.1  RNA 5'-monophosphate methyltransferase

      UniProtKB/TrEMBL
      A0A6I8RVM3
      Related
      ENSXETP00000089169.1, ENSXETT00000074440.2
      Conserved Domains (2) summary
      pfam06859
      Location:146 → 251
      Bin3; Bicoid-interacting protein 3 (Bin3)
      cl17173
      Location:61 → 177
      AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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    Research Materials