slc22a5 solute carrier family 22 member 5 [Xenopus tropicalis (tropical clawed frog)] - Gene

Summary

Official Symbol: slc22a5provided by Xenbase
Official Full Name: solute carrier family 22 member 5provided by Xenbase
Primary source: Xenbase:XB-GENE-484416
See related: Ensembl:ENSXETG00000016581 AllianceGenome:Xenbase:XB-GENE-484416
Gene type: protein coding
RefSeq status: MODEL
Organism: Xenopus tropicalis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as: octn2
Summary: Predicted to enable ATP binding activity and transmembrane transporter activity. Predicted to act upstream of or within carnitine transport; sodium ion transport; and transmembrane transport. Predicted to be located in basal plasma membrane. Human ortholog(s) of this gene implicated in Crohn's disease; cardiomyopathy; inherited metabolic disorder; rheumatoid arthritis; and systemic primary carnitine deficiency disease. Orthologous to several human genes including SLC22A4 (solute carrier family 22 member 4). [provided by Alliance of Genome Resources, Nov 2024]
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Annotation release	Status	Assembly	Chr	Location
104	current	UCB_Xtro_10.0 (GCF_000004195.4)	3	NC_030679.2 (36403682..36426967)
103	previous assembly	Xenopus_tropicalis_v9.1 (GCF_000004195.3)	3	NC_030679.1 (27184600..27207265)

Chromosome 3 - NC_030679.2 Genomic Context describing neighboring genes

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Submit: New GeneRIF Correction

Function	Evidence Code	Pubs
enables ATP binding	IEA Inferred from Electronic Annotation more info
enables transmembrane transporter activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within carnitine transport	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within sodium ion transport	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within transmembrane transport	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in basal plasma membrane	IEA Inferred from Electronic Annotation more info
located_in membrane	IEA Inferred from Electronic Annotation more info
located_in plasma membrane	IEA Inferred from Electronic Annotation more info

Names: solute carrier family 22 (organic cation/carnitine transporter), member 5

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The following sections contain reference sequences that belong to a specific genome build. Explain