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    LOC100486631 cohesin subunit SA-2 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100486631, updated on 4-Nov-2024

    Summary

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    Official Symbol
    LOC100486631provided by Xenbase
    Official Full Name
    cohesin subunit SA-2provided by Xenbase
    Primary source
    Xenbase:XB-GENE-29078423
    See related
    Ensembl:ENSXETG00000004123 AllianceGenome:Xenbase:XB-GENE-29078423
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Summary
    Predicted to act upstream of or within cell division; chromosome segregation; and sister chromatid cohesion. Predicted to be located in chromatin; chromosome, centromeric region; and nucleus. Predicted to be part of cohesin complex. [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See LOC100486631 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    34
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 2 NC_030678.2 (115046517..115094274)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 2 NC_030678.1 (111499865..111546974)

    Chromosome 2 - NC_030678.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100486952 Neighboring gene GTP binding protein 6 (putative) Neighboring gene protein phosphatase 2 regulatory subunit B', beta Neighboring gene SHOX homeobox

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Process Evidence Code Pubs
    acts_upstream_of_or_within cell division IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within chromosome segregation IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within sister chromatid cohesion IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chromatin IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in chromosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in chromosome, centromeric region IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of cohesin complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    cohesin subunit SA-2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      115046517..115094274
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031897028.1 → XP_031752888.1  cohesin subunit SA-2 isoform X1

      UniProtKB/TrEMBL
      F7BG32
      Conserved Domains (1) summary
      pfam08514
      Location:177 → 285
      STAG; STAG domain

    2. XM_002936974.5 → XP_002937020.2  cohesin subunit SA-2 isoform X1

      UniProtKB/TrEMBL
      F7BG32
      Conserved Domains (1) summary
      pfam08514
      Location:177 → 285
      STAG; STAG domain

    3. XM_031897027.1 → XP_031752887.1  cohesin subunit SA-2 isoform X1

      UniProtKB/TrEMBL
      F7BG32
      Related
      ENSXETP00000008915.5, ENSXETT00000008915.5
      Conserved Domains (1) summary
      pfam08514
      Location:177 → 285
      STAG; STAG domain

    4. XM_018091643.2 → XP_017947132.1  cohesin subunit SA-2 isoform X2

      UniProtKB/TrEMBL
      A0A6I8STP1
      Related
      ENSXETP00000095430.2, ENSXETT00000068746.2
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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