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    msh3 mutS homolog 3 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100486354, updated on 17-Aug-2024

    Summary

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    Official Symbol
    msh3provided by Xenbase
    Official Full Name
    mutS homolog 3provided by Xenbase
    Primary source
    Xenbase:XB-GENE-1014070
    See related
    Ensembl:ENSXETG00000022941
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Orthologs
    human mouse all
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    Genomic context

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    See msh3 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 1 NC_030677.2 (182057845..182127654, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 1 NC_030677.1 (167649945..167719721)

    Chromosome 1 - NC_030677.2Genomic Context describing neighboring genes Neighboring gene Ras protein specific guanine nucleotide releasing factor 2 Neighboring gene uncharacterized LOC116407697 Neighboring gene dihydrofolate reductase Neighboring gene ankyrin repeat domain 34B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATP-dependent DNA damage sensor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables mismatched DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within DNA damage response IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within mismatch repair IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    DNA mismatch repair protein Msh3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030677.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      182057845..182127654 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002942361.5 → XP_002942407.2  DNA mismatch repair protein Msh3 isoform X1

      UniProtKB/TrEMBL
      A0A6I8RK82, A0A6I8SYY1
      Related
      ENSXETP00000085263.2, ENSXETT00000071685.2
      Conserved Domains (1) summary
      COG0249
      Location:178 → 1072
      MutS; DNA mismatch repair ATPase MutS [Replication, recombination and repair]

    2. XM_018090787.2 → XP_017946276.1  DNA mismatch repair protein Msh3 isoform X2

      UniProtKB/TrEMBL
      A0A6I8R7P3, A0A8J0T168
      Related
      ENSXETP00000081622.2, ENSXETT00000070315.2
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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