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    hnf4g hepatocyte nuclear factor 4 gamma [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100486239, updated on 4-Nov-2024

    Summary

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    Official Symbol
    hnf4gprovided by Xenbase
    Official Full Name
    hepatocyte nuclear factor 4 gammaprovided by Xenbase
    Primary source
    Xenbase:XB-GENE-487527
    See related
    Ensembl:ENSXETG00000017845 AllianceGenome:Xenbase:XB-GENE-487527
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Summary
    Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; nuclear steroid receptor activity; and zinc ion binding activity. Predicted to act upstream of or within regulation of DNA-templated transcription. Predicted to be located in nucleus. Orthologous to human HNF4G (hepatocyte nuclear factor 4 gamma). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See hnf4g in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 6 NC_030682.2 (121812471..121860096)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 6 NC_030682.1 (106962488..107008645)

    Chromosome 6 - NC_030682.2Genomic Context describing neighboring genes Neighboring gene peptidase inhibitor 15 Neighboring gene cysteine-rich secretory protein LCCL domain containing 1 Neighboring gene uncharacterized LOC116411709 Neighboring gene zinc finger homeobox 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nuclear steroid receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    hepatocyte nuclear factor 4-gamma

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030682.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      121812471..121860096
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004915166.3 → XP_004915223.1  hepatocyte nuclear factor 4-gamma isoform X2

      See identical proteins and their annotated locations for XP_004915223.1

      UniProtKB/TrEMBL
      A0A5S6P5R4
      Related
      ENSXETP00000070585.1, ENSXETT00000083900.2
      Conserved Domains (2) summary
      cd06931
      Location:103 → 324
      NR_LBD_HNF4_like; The ligand binding domain of heptocyte nuclear factor 4, which is explosively expanded in nematodes
      cd06960
      Location:12 → 87
      NR_DBD_HNF4A; DNA-binding domain of heptocyte nuclear factor 4 (HNF4) is composed of two C4-type zinc fingers

    2. XM_002939588.4 → XP_002939634.1  hepatocyte nuclear factor 4-gamma isoform X1

      UniProtKB/TrEMBL
      A0A6I8R512
      Related
      ENSXETP00000080802.2, ENSXETT00000085987.2
      Conserved Domains (2) summary
      cd06931
      Location:150 → 371
      NR_LBD_HNF4_like; The ligand binding domain of heptocyte nuclear factor 4, which is explosively expanded in nematodes
      cd06960
      Location:59 → 134
      NR_DBD_HNF4A; DNA-binding domain of heptocyte nuclear factor 4 (HNF4) is composed of two C4-type zinc fingers
    Nucleotide Protein Strain
    Heading Accession and Version

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