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    helq helicase, POLQ like [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100485183, updated on 4-Nov-2024

    Summary

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    Official Symbol
    helqprovided by Xenbase
    Official Full Name
    helicase, POLQ likeprovided by Xenbase
    Primary source
    Xenbase:XB-GENE-993428
    See related
    Ensembl:ENSXETG00000001831 AllianceGenome:Xenbase:XB-GENE-993428
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    hel308
    Summary
    Predicted to enable several functions, including ATP binding activity; DNA binding activity; and helicase activity. Orthologous to human HELQ (helicase, POLQ like). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See helq in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 1 NC_030677.2 (85428685..85500648, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 1 NC_030677.1 (91719362..91791162, complement)

    Chromosome 1 - NC_030677.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100489354 Neighboring gene SEC31 homolog A, COPII coat complex component Neighboring gene uncharacterized LOC105946056 Neighboring gene glycerol-3-phosphate acyltransferase 3 Neighboring gene NK6 homeobox 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    helicase POLQ-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030677.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      85428685..85500648 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002939582.5 → XP_002939628.2  helicase POLQ-like isoform X1

      See identical proteins and their annotated locations for XP_002939628.2

      UniProtKB/TrEMBL
      A0A6I8Q655, A0A6I8RQT8
      Conserved Domains (2) summary
      PRK02362
      Location:231 → 957
      PRK02362; ATP-dependent DNA helicase
      cd18026
      Location:231 → 433
      DEXHc_POLQ-like; DEXH-box helicase domain of DNA polymerase theta

    2. XM_018097412.2 → XP_017952901.1  helicase POLQ-like isoform X1

      UniProtKB/TrEMBL
      A0A6I8Q655, A0A6I8RQT8
      Conserved Domains (2) summary
      PRK02362
      Location:231 → 957
      PRK02362; ATP-dependent DNA helicase
      cd18026
      Location:231 → 433
      DEXHc_POLQ-like; DEXH-box helicase domain of DNA polymerase theta

    3. XM_018097414.2 → XP_017952903.1  helicase POLQ-like isoform X1

      UniProtKB/TrEMBL
      A0A6I8Q655, A0A6I8RQT8
      Conserved Domains (2) summary
      PRK02362
      Location:231 → 957
      PRK02362; ATP-dependent DNA helicase
      cd18026
      Location:231 → 433
      DEXHc_POLQ-like; DEXH-box helicase domain of DNA polymerase theta

    4. XM_031903451.1 → XP_031759311.1  helicase POLQ-like isoform X1

      UniProtKB/TrEMBL
      A0A6I8Q655, A0A6I8RQT8
      Related
      ENSXETP00000085027.1, ENSXETT00000085713.2
      Conserved Domains (2) summary
      PRK02362
      Location:231 → 957
      PRK02362; ATP-dependent DNA helicase
      cd18026
      Location:231 → 433
      DEXHc_POLQ-like; DEXH-box helicase domain of DNA polymerase theta

    5. XM_018097417.2 → XP_017952906.1  helicase POLQ-like isoform X1

      UniProtKB/TrEMBL
      A0A6I8Q655, A0A6I8RQT8
      Conserved Domains (2) summary
      PRK02362
      Location:231 → 957
      PRK02362; ATP-dependent DNA helicase
      cd18026
      Location:231 → 433
      DEXHc_POLQ-like; DEXH-box helicase domain of DNA polymerase theta

    6. XM_031903454.1 → XP_031759314.1  helicase POLQ-like isoform X2

      UniProtKB/TrEMBL
      A0A8J1JN52
      Conserved Domains (2) summary
      PRK02362
      Location:1 → 579
      PRK02362; ATP-dependent DNA helicase
      cl11966
      Location:541 → 621
      NT_Pol-beta-like; Nucleotidyltransferase (NT) domain of DNA polymerase beta and similar proteins
    Nucleotide Protein Strain
    Heading Accession and Version

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