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    XB983422 uncharacterized XB983422 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100485159, updated on 4-Nov-2024

    Summary

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    Symbol
    XB983422provided by Xenbase
    Full Name
    uncharacterized XB983422provided by Xenbase
    Primary source
    Xenbase:XB-GENE-983423
    See related
    Ensembl:ENSXETG00000036726 AllianceGenome:Xenbase:XB-GENE-983423
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Summary
    Predicted to enable phosphatidylcholine-retinol O-acyltransferase activity. Predicted to act upstream of or within retinol metabolic process. Predicted to be located in membrane. [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See XB983422 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 1 NC_030677.2 (54405518..54469771, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 1 NC_030677.1 (45160534..45224349, complement)

    Chromosome 1 - NC_030677.2Genomic Context describing neighboring genes Neighboring gene lecithin retinol acyltransferase pseudogene Neighboring gene lecithin retinol acyltransferase Neighboring gene uncharacterized protein K02A2.6-like Neighboring gene uncharacterized LOC116411984

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables phosphatidylcholine-retinol O-acyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within retinol metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC100485159

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030677.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      54405518..54469771 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012955626.3 → XP_012811080.2  uncharacterized protein LOC100485159 isoform X3

      UniProtKB/TrEMBL
      A0A6I8PS41, A0A6I8SRQ8
      Related
      ENSXETP00000100564.2, ENSXETT00000102856.2
      Conserved Domains (1) summary
      pfam07287
      Location:56 → 408
      AtuA; Acyclic terpene utilisation family protein AtuA

    2. XM_012955625.3 → XP_012811079.2  uncharacterized protein LOC100485159 isoform X3

      UniProtKB/TrEMBL
      A0A6I8PS41, A0A6I8SRQ8
      Related
      ENSXETP00000055214.4, ENSXETT00000055214.4
      Conserved Domains (1) summary
      pfam07287
      Location:56 → 408
      AtuA; Acyclic terpene utilisation family protein AtuA

    3. XM_012955624.3 → XP_012811078.2  uncharacterized protein LOC100485159 isoform X1

      UniProtKB/TrEMBL
      A0A6I8PS41, A0A8J0SAY4
      Conserved Domains (1) summary
      pfam07287
      Location:113 → 465
      AtuA; Acyclic terpene utilisation family protein AtuA

    4. XM_002933488.5 → XP_002933534.3  uncharacterized protein LOC100485159 isoform X2

      UniProtKB/TrEMBL
      A0A6I8RKE7, A0A8J0QMA9
      Conserved Domains (1) summary
      pfam07287
      Location:113 → 465
      AtuA; Acyclic terpene utilisation family protein AtuA
    Nucleotide Protein Strain
    Heading Accession and Version

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