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    rpusd1 RNA pseudouridine synthase domain containing 1 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100380010, updated on 25-Apr-2024

    Summary

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    Official Symbol
    rpusd1provided by Xenbase
    Official Full Name
    RNA pseudouridine synthase domain containing 1provided by Xenbase
    Primary source
    Xenbase:XB-GENE-953402
    See related
    Ensembl:ENSXETG00000007184 Ensembl:ENSXETG00000039706
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Orthologs
    human mouse all
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    Genomic context

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    See rpusd1 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 9 NC_030685.2 (16316329..16354074)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 9 NC_030685.1 (10531588..10569689)

    Chromosome 9 - NC_030685.2Genomic Context describing neighboring genes Neighboring gene guanine nucleotide binding protein (G protein), gamma 13 Neighboring gene chromosome transmission fidelity factor 18 Neighboring gene mesothelin Neighboring gene provisional ortholog of SprT-like N-terminal domain

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables pseudouridine synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within pseudouridine synthesis IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    RNA pseudouridylate synthase domain-containing protein 1
    Names
    RNA pseudouridylate synthase domain containing 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030685.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      16316329..16354074
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031892877.1 → XP_031748737.1  RNA pseudouridylate synthase domain-containing protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A6I8RE67
      Related
      ENSXETP00000079454.2, ENSXETT00000091339.2
      Conserved Domains (1) summary
      pfam05485
      Location:37 → 126
      THAP; THAP domain

    2. XM_031892876.1 → XP_031748736.1  RNA pseudouridylate synthase domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A6I8SSS7, A0A8J1IW69
      Conserved Domains (1) summary
      pfam05485
      Location:38 → 126
      THAP; THAP domain

    3. XM_012970819.3 → XP_012826273.2  RNA pseudouridylate synthase domain-containing protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A803J9M1
      Related
      ENSXETP00000104576.1, ENSXETT00000109211.1
      Conserved Domains (1) summary
      pfam05485
      Location:7 → 94
      THAP; THAP domain

    4. XM_012970821.3 → XP_012826275.2  RNA pseudouridylate synthase domain-containing protein 1 isoform X4

      UniProtKB/TrEMBL
      F6RAK7
      Related
      ENSXETP00000015611.5, ENSXETT00000015611.5
      Conserved Domains (1) summary
      cd02869
      Location:18 → 213
      PseudoU_synth_RluA_like; Pseudouridine synthase, RluA family

    5. XM_002935848.5 → XP_002935894.2  RNA pseudouridylate synthase domain-containing protein 1 isoform X4

      UniProtKB/TrEMBL
      F6RAK7
      Conserved Domains (1) summary
      cd02869
      Location:18 → 213
      PseudoU_synth_RluA_like; Pseudouridine synthase, RluA family

    6. XM_012970820.3 → XP_012826274.2  RNA pseudouridylate synthase domain-containing protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A803J9M1
      Related
      ENSXETP00000116420.1, ENSXETT00000120495.1
      Conserved Domains (1) summary
      pfam05485
      Location:7 → 94
      THAP; THAP domain
    Nucleotide Protein Strain
    Heading Accession and Version

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