U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    rad17 RAD17 checkpoint clamp loader component [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100379791, updated on 4-Nov-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    rad17provided by Xenbase
    Official Full Name
    RAD17 checkpoint clamp loader componentprovided by Xenbase
    Primary source
    Xenbase:XB-GENE-1002356
    See related
    Ensembl:ENSXETG00000018168 AllianceGenome:Xenbase:XB-GENE-1002356
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    xrad17
    Summary
    Predicted to enable ATP binding activity and DNA clamp loader activity. Predicted to act upstream of or within DNA damage checkpoint signaling and DNA repair. Predicted to be located in nucleus. Predicted to be part of Rad17 RFC-like complex. Orthologous to human RAD17 (RAD17 checkpoint clamp loader component). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See rad17 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 1 NC_030677.2 (182309148..182323862, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 1 NC_030677.1 (167457994..167472691)

    Chromosome 1 - NC_030677.2Genomic Context describing neighboring genes Neighboring gene zinc finger FYVE-type containing 16 Neighboring gene coiled-coil domain containing 125 Neighboring gene adenylate kinase 6 Neighboring gene MARVEL domain containing 2

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA clamp loader activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within DNA damage checkpoint signaling IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within DNA damage response IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within DNA repair IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of Rad17 RFC-like complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    cell cycle checkpoint protein RAD17
    Names
    RAD17 homolog

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030677.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      182309148..182323862 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002934815.5 → XP_002934861.1  cell cycle checkpoint protein RAD17

      See identical proteins and their annotated locations for XP_002934861.1

      UniProtKB/TrEMBL
      F7BJV6
      Related
      ENSXETP00000039408.4, ENSXETT00000039408.4
      Conserved Domains (1) summary
      TIGR00602
      Location:13 → 615
      rad24; checkpoint protein rad24

    2. XM_004910804.4 → XP_004910861.1  cell cycle checkpoint protein RAD17

      See identical proteins and their annotated locations for XP_004910861.1

      UniProtKB/TrEMBL
      F7BJV6
      Conserved Domains (1) summary
      TIGR00602
      Location:13 → 615
      rad24; checkpoint protein rad24

    3. XM_031893601.1 → XP_031749461.1  cell cycle checkpoint protein RAD17

      UniProtKB/TrEMBL
      F7BJV6
      Conserved Domains (1) summary
      TIGR00602
      Location:13 → 615
      rad24; checkpoint protein rad24
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut