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    mrpl48 mitochondrial ribosomal protein L48 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100379781, updated on 4-Nov-2024

    Summary

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    Official Symbol
    mrpl48provided by Xenbase
    Official Full Name
    mitochondrial ribosomal protein L48provided by Xenbase
    Primary source
    Xenbase:XB-GENE-997534
    See related
    Ensembl:ENSXETG00000023199 AllianceGenome:Xenbase:XB-GENE-997534
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Summary
    Predicted to be located in mitochondrial ribosome. Predicted to be part of ribonucleoprotein complex. Orthologous to human MRPL48 (mitochondrial ribosomal protein L48). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See mrpl48 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 2 NC_030678.2 (174071953..174082885)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) Unplaced Scaffold NW_016683507.1 (335619..347546, complement)

    Chromosome 2 - NC_030678.2Genomic Context describing neighboring genes Neighboring gene pleckstrin homology domain-containing family B member 1-like Neighboring gene RAB6A, member RAS oncogene family Neighboring gene DNA damage-regulated autophagy modulator protein 1 Neighboring gene NADH:ubiquinone oxidoreductase subunit C2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Component Evidence Code Pubs
    located_in mitochondrial ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    39S ribosomal protein L48, mitochondrial

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      174071953..174082885
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018089946.2 → XP_017945435.1  39S ribosomal protein L48, mitochondrial isoform X1

      UniProtKB/TrEMBL
      A0A6I8S287
      Conserved Domains (1) summary
      pfam00338
      Location:99 → 194
      Ribosomal_S10; Ribosomal protein S10p/S20e

    2. XM_018089945.2 → XP_017945434.1  39S ribosomal protein L48, mitochondrial isoform X1

      UniProtKB/TrEMBL
      A0A6I8S287
      Related
      ENSXETP00000090996.1, ENSXETT00000078381.2
      Conserved Domains (1) summary
      pfam00338
      Location:99 → 194
      Ribosomal_S10; Ribosomal protein S10p/S20e

    3. XM_012958099.3 → XP_012813553.1  39S ribosomal protein L48, mitochondrial isoform X2

      See identical proteins and their annotated locations for XP_012813553.1

      UniProtKB/TrEMBL
      A0A7D9NMF5
      Related
      ENSXETP00000050152.4, ENSXETT00000050152.5
      Conserved Domains (1) summary
      pfam00338
      Location:85 → 180
      Ribosomal_S10; Ribosomal protein S10p/S20e

    4. XM_004912234.4 → XP_004912291.1  39S ribosomal protein L48, mitochondrial isoform X2

      See identical proteins and their annotated locations for XP_004912291.1

      UniProtKB/TrEMBL
      A0A7D9NMF5
      Conserved Domains (1) summary
      pfam00338
      Location:85 → 180
      Ribosomal_S10; Ribosomal protein S10p/S20e
    Nucleotide Protein Strain
    Heading Accession and Version

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