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    rpia ribose 5-phosphate isomerase A [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100379778, updated on 4-Nov-2024

    Summary

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    Official Symbol
    rpiaprovided by Xenbase
    Official Full Name
    ribose 5-phosphate isomerase Aprovided by Xenbase
    Primary source
    Xenbase:XB-GENE-995580
    See related
    Ensembl:ENSXETG00000005702 AllianceGenome:Xenbase:XB-GENE-995580
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Summary
    Predicted to enable ribose-5-phosphate isomerase activity. Predicted to act upstream of or within pentose-phosphate shunt, non-oxidative branch. Orthologous to human RPIA (ribose 5-phosphate isomerase A). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See rpia in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 1 NC_030677.2 (9415745..9432232)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) Unplaced Scaffold NW_016683519.1 (19903..32953, complement)

    Chromosome 1 - NC_030677.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100488909 Neighboring gene vomeronasal type-2 receptor 26-like Neighboring gene immunoglobulin kappa variable 3-20-like Neighboring gene Ig kappa chain C region, A allele

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables isomerase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ribose-5-phosphate isomerase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within pentose-phosphate shunt IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within pentose-phosphate shunt, non-oxidative branch IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within small molecule metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    ribose-5-phosphate isomerase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030677.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      9415745..9432232
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031895223.1 → XP_031751083.1  ribose-5-phosphate isomerase

      UniProtKB/TrEMBL
      A0A6I8RPG6, F6TG15
      Related
      ENSXETP00000108068.1, ENSXETT00000112677.1
      Conserved Domains (1) summary
      cd01398
      Location:17 → 234
      RPI_A; Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. This reaction leads to the ...

    2. XM_031895224.1 → XP_031751084.1  ribose-5-phosphate isomerase

      UniProtKB/TrEMBL
      A0A6I8RPG6, F6TG15
      Conserved Domains (1) summary
      cd01398
      Location:17 → 234
      RPI_A; Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. This reaction leads to the ...
    Nucleotide Protein Strain
    Heading Accession and Version

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