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    armc9 armadillo repeat containing 9 [ Danio rerio (zebrafish) ]

    Gene ID: 100334308, updated on 12-Sep-2024

    Summary

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    Gene symbol
    armc9
    Gene description
    armadillo repeat containing 9
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Annotation information
    Annotation category: partial on reference assembly
    Orthologs
    human mouse all
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    Genomic context

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    See armc9 in Genome Data Viewer
    Location:
    chromosome: 22
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 22 NC_007133.7 (36531672..36634319)
    105 previous assembly GRCz10 (GCF_000002035.5) 22 NC_007133.6 (36562760..36665584)

    Chromosome 22 - NC_007133.7Genomic Context describing neighboring genes Neighboring gene major facilitator superfamily domain containing 8-like 1 Neighboring gene RNA polymerase II, I and III subunit H Neighboring gene UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7 Neighboring gene small nucleolar RNA SNORA75 Neighboring gene nucleolin

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Mutations in ARMC9, which Encodes a Basal Body Protein, Cause Joubert Syndrome in Humans and Ciliopathy Phenotypes in Zebrafish. Van De Weghe JC, et al. Am J Hum Genet, 2017 Jul 6. PMID 28625504, Free PMC Article
    2. Dysfunction of the ciliary ARMC9/TOGARAM1 protein module causes Joubert syndrome. Latour BL, et al. J Clin Invest, 2020 Aug 3. PMID 32453716, Free PMC Article
    3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Dysfunction of the ciliary ARMC9/TOGARAM1 protein module causes Joubert syndrome.
      Title: Dysfunction of the ciliary ARMC9/TOGARAM1 protein module causes Joubert syndrome.
    2. ARMC9 localizes to the basal body of the cilium and is upregulated during ciliogenesis.
      Title: Mutations in ARMC9, which Encodes a Basal Body Protein, Cause Joubert Syndrome in Humans and Ciliopathy Phenotypes in Zebrafish.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    General protein information

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    Preferred Names
    lisH domain-containing protein ARMC9

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007133.7 Reference GRCz11 Primary Assembly

      Range
      36531672..36634319
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068216489.1 → XP_068072590.1  lisH domain-containing protein ARMC9

    Nucleotide Protein Strain
    Heading Accession and Version

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