h2af1al H2A histone family member 1a like [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: h2af1alprovided by ZNC
Official Full Name: H2A histone family member 1a likeprovided by ZNC
Primary source: ZFIN:ZDB-GENE-160922-1
See related: Ensembl:ENSDARG00000098739 AllianceGenome:ZFIN:ZDB-GENE-160922-1
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: h2af1o
Summary: Acts upstream of or within regulation of mitotic cell cycle, embryonic. Located in nucleus. Is expressed in ovary and unfertilized egg. Orthologous to human H2AJ (H2A.J histone). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs: all
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Genomic context

Location:: chromosome: Un

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	Unplaced Scaffold	NW_003334027.1 (14151..15108, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	Unplaced Scaffold	NW_003334027.1 (14151..15121, complement)

NW_003334027.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Data suggest that H2af1o (an oocyte-specific H2A variant) functions in early embryos in maintaining cell synchrony during cell division/oogenesis.
Title: Oocyte-specific H2A variant H2af1o is required for cell synchrony before midblastula transition in early zebrafish embryos.

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General gene information

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Gene Ontology Provided by ZFIN

Process	Evidence Code	Pubs
acts_upstream_of_or_within regulation of mitotic cell cycle, embryonic	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
located_in nucleus	IDA Inferred from Direct Assay more info	PubMed

General protein information

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Preferred Names: H2A histone family member 1a like

Names: histone H2A, sperm-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.