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    fbxl20 F-box and leucine-rich repeat protein 20 [ Danio rerio (zebrafish) ]

    Gene ID: 100331130, updated on 28-Oct-2024

    Summary

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    Official Symbol
    fbxl20provided by ZNC
    Official Full Name
    F-box and leucine-rich repeat protein 20provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-081031-27
    See related
    Ensembl:ENSDARG00000075567 AllianceGenome:ZFIN:ZDB-GENE-081031-27
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    si:ch73-79d13.2
    Summary
    Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process. Predicted to be part of SCF ubiquitin ligase complex. Orthologous to human FBXL20 (F-box and leucine rich repeat protein 20). [provided by Alliance of Genome Resources, Oct 2024]
    Orthologs
    all
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    Genomic context

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    See fbxl20 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (4828247..4851399, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (4911500..4934961, complement)

    Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene ST3 beta-galactoside alpha-2,3-sialyltransferase 1 Neighboring gene ST3 beta-galactoside alpha-2,3-sialyltransferase 1, like Neighboring gene cyclin dependent kinase 12 Neighboring gene protein phosphatase 1, regulatory (inhibitor) subunit 1B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    involved_in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    part_of SCF ubiquitin ligase complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    F-box/LRR-repeat protein 20

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007130.7 Reference GRCz11 Primary Assembly

      Range
      4828247..4851399 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002664711.6 → XP_002664757.2  F-box/LRR-repeat protein 20

      UniProtKB/TrEMBL
      A0A8M1RHP8, B8K0E7
      Related
      ENSDARP00000100443.3, ENSDART00000110398.4
      Conserved Domains (3) summary
      cd09293
      Location:206 → 394
      AMN1; Antagonist of mitotic exit network protein 1
      sd00034
      Location:145 → 170
      LRR_AMN1; leucine-rich repeat [structural motif]
      pfam12937
      Location:28 → 70
      F-box-like; F-box-like
    Nucleotide Protein
    Heading Accession and Version

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