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    snupn snurportin 1 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100329139, updated on 4-Nov-2024

    Summary

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    Official Symbol
    snupnprovided by Xenbase
    Official Full Name
    snurportin 1provided by Xenbase
    Primary source
    Xenbase:XB-GENE-967845
    See related
    Ensembl:ENSXETG00000015280 AllianceGenome:Xenbase:XB-GENE-967845
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    kpnbl; rnut1; snurportin1
    Summary
    Predicted to enable RNA binding activity and nuclear import signal receptor activity. Predicted to act upstream of or within protein import into nucleus and snRNA import into nucleus. Predicted to be located in cytoplasm and nucleus. Orthologous to human SNUPN (snurportin 1). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See snupn in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 3 NC_030679.2 (93319200..93331739)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 3 NC_030679.1 (83662476..83675022)

    Chromosome 3 - NC_030679.2Genomic Context describing neighboring genes Neighboring gene chondroitin sulfate proteoglycan 4 Neighboring gene uncharacterized LOC116409764 Neighboring gene sorting nexin 33 Neighboring gene protein tyrosine phosphatase non-receptor type 9 Neighboring gene SIN3 transcription regulator family member A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nuclear import signal receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within protein import into nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within snRNA import into nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    snurportin-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001171720.1 → NP_001165191.1  snurportin-1

      See identical proteins and their annotated locations for NP_001165191.1

      Status: PROVISIONAL

      Source sequence(s)
      CT030315
      UniProtKB/TrEMBL
      A0A8J0QFJ3
      Conserved Domains (2) summary
      cd09232
      Location:102 → 286
      Snurportin-1_C; C-terminal m3G cap-binding domain of nuclear import adaptor snurportin-1
      pfam11538
      Location:25 → 64
      Snurportin1

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030679.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      93319200..93331739
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012966251.3 → XP_012821705.1  snurportin-1 isoform X2

      See identical proteins and their annotated locations for XP_012821705.1

      UniProtKB/TrEMBL
      A0A8J0QFJ3
      Conserved Domains (2) summary
      cd09232
      Location:102 → 286
      Snurportin-1_C; C-terminal m3G cap-binding domain of nuclear import adaptor snurportin-1
      pfam11538
      Location:25 → 64
      Snurportin1

    2. XM_012966250.3 → XP_012821704.1  snurportin-1 isoform X1

      UniProtKB/TrEMBL
      F6TAQ8
      Related
      ENSXETP00000033411.3, ENSXETT00000033411.4
      Conserved Domains (2) summary
      cd09232
      Location:112 → 296
      Snurportin-1_C; C-terminal m3G cap-binding domain of nuclear import adaptor snurportin-1
      pfam11538
      Location:35 → 74
      Snurportin1; Snurportin1
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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