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    dclre1b DNA cross-link repair 1B [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100170639, updated on 17-Aug-2024

    Summary

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    Official Symbol
    dclre1bprovided by Xenbase
    Official Full Name
    DNA cross-link repair 1Bprovided by Xenbase
    Primary source
    Xenbase:XB-GENE-981156
    See related
    Ensembl:ENSXETG00000013186
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    snm1b; apollo
    Orthologs
    human mouse all
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    Genomic context

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    See dclre1b in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 2 NC_030678.2 (62637674..62648669)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 2 NC_030678.1 (75956226..75967209)

    Chromosome 2 - NC_030678.2Genomic Context describing neighboring genes Neighboring gene protein tyrosine phosphatase non-receptor type 22 Neighboring gene uncharacterized LOC100492643 Neighboring gene adaptor related protein complex 4 subunit beta 1 Neighboring gene amphibian RCA protein 3 Neighboring gene amphibian RCA protein 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables exonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within DNA repair IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chromosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in chromosome, telomeric region IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    5' exonuclease Apollo
    Names
    DNA cross-link repair 1B (PSO2 homolog)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      62637674..62648669
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002932121.5 → XP_002932167.1  5' exonuclease Apollo

      See identical proteins and their annotated locations for XP_002932167.1

      UniProtKB/TrEMBL
      F7D944
      Conserved Domains (3) summary
      cd11662
      Location:476 → 510
      apollo_TRF2_binding; TRF2-binding region of apollo and similar proteins
      COG0595
      Location:28 → 297
      RnjA; mRNA degradation ribonuclease J1/J2 [Translation, ribosomal structure and biogenesis]
      cd16273
      Location:6 → 151
      SNM1A-1C-like_MBL-fold; SNM1A , artemis/SNM1C, yeast Pso2p, and related proteins; MBL-fold metallo-hydrolase domain

    2. XM_002932120.5 → XP_002932166.1  5' exonuclease Apollo

      See identical proteins and their annotated locations for XP_002932166.1

      UniProtKB/TrEMBL
      F7D944
      Related
      ENSXETP00000028864.4, ENSXETT00000028864.5
      Conserved Domains (3) summary
      cd11662
      Location:476 → 510
      apollo_TRF2_binding; TRF2-binding region of apollo and similar proteins
      COG0595
      Location:28 → 297
      RnjA; mRNA degradation ribonuclease J1/J2 [Translation, ribosomal structure and biogenesis]
      cd16273
      Location:6 → 151
      SNM1A-1C-like_MBL-fold; SNM1A , artemis/SNM1C, yeast Pso2p, and related proteins; MBL-fold metallo-hydrolase domain
    Nucleotide Protein Strain
    Heading Accession and Version

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