U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    carm1 coactivator associated arginine methyltransferase 1 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100170180, updated on 10-Oct-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    carm1provided by Xenbase
    Official Full Name
    coactivator associated arginine methyltransferase 1provided by Xenbase
    Primary source
    Xenbase:XB-GENE-484572
    See related
    Ensembl:ENSXETG00000009357
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    prmt4
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See carm1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 3 NC_030679.2 (138857298..138874548)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 3 NC_030679.1 (128016033..128033125)

    Chromosome 3 - NC_030679.2Genomic Context describing neighboring genes Neighboring gene transmembrane p24 trafficking protein 1 Neighboring gene protein HIDE1-like Neighboring gene Yip1 domain family member 2 Neighboring gene translocase of inner mitochondrial membrane 29

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein-arginine N-methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein-arginine omega-N asymmetric methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within methylation IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within peptidyl-arginine methylation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chromosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    coactivator associated arginine methyltransferase 1; histone-arginine methyltransferase CARM1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001404616.1 → NP_001391545.1  coactivator associated arginine methyltransferase 1 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AAMC04000003
      UniProtKB/TrEMBL
      F7EG74

    2. NM_001404617.1 → NP_001391546.1  coactivator associated arginine methyltransferase 1 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AAMC04000003
      UniProtKB/TrEMBL
      A0A8J0QZ67

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030679.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      138857298..138874548
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002942841.5 → XP_002942887.1  histone-arginine methyltransferase CARM1 isoform X1

      UniProtKB/TrEMBL
      F7EG74
      Related
      ENSXETP00000020625.3, ENSXETT00000020625.5
      Conserved Domains (2) summary
      pfam11531
      Location:9 → 109
      CARM1; Coactivator-associated arginine methyltransferase 1 N terminal
      pfam13649
      Location:159 → 254
      Methyltransf_25; Methyltransferase domain

    2. XM_002942842.5 → XP_002942888.1  histone-arginine methyltransferase CARM1 isoform X2

      Conserved Domains (2) summary
      pfam11531
      Location:9 → 109
      CARM1; Coactivator-associated arginine methyltransferase 1 N terminal
      pfam13649
      Location:159 → 254
      Methyltransf_25; Methyltransferase domain
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.