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    spice1 spindle and centriole associated protein 1 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100158570, updated on 17-Aug-2024

    Summary

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    Official Symbol
    spice1provided by Xenbase
    Official Full Name
    spindle and centriole associated protein 1provided by Xenbase
    Primary source
    Xenbase:XB-GENE-993581
    See related
    Ensembl:ENSXETG00000032429
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    ccdc52
    Orthologs
    human mouse all
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    Genomic context

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    See spice1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 2 NC_030678.2 (3456329..3472461, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 2 NC_030678.1 (281358..296512, complement)

    Chromosome 2 - NC_030678.2Genomic Context describing neighboring genes Neighboring gene cystatin-A Neighboring gene cystatin-A Neighboring gene zinc finger, DHHC-type containing 23 Neighboring gene coiled-coil domain containing 191 Neighboring gene queuine tRNA-ribosyltransferase accessory subunit 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Defining synphenotype groups in Xenopus tropicalis by use of antisense morpholino oligonucleotides. Rana AA, et al. PLoS Genet, 2006 Nov 17. PMID 17112317, Free PMC Article
    2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Process Evidence Code Pubs
    acts_upstream_of_or_within axis elongation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within embryonic body morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within gastrulation with mouth forming second IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within mitotic spindle assembly IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in spindle IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    spindle and centriole-associated protein 1
    Names
    coiled-coil domain containing 52

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001128000.1 → NP_001121472.1  spindle and centriole-associated protein 1

      See identical proteins and their annotated locations for NP_001121472.1

      Status: PROVISIONAL

      Source sequence(s)
      BC166242
      UniProtKB/TrEMBL
      B2GUE3
      Conserved Domains (1) summary
      pfam15678
      Location:34 → 419
      SPICE; Centriole duplication and mitotic chromosome congression

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      3456329..3472461 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012956518.3 → XP_012811972.1  spindle and centriole-associated protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A8J0S766
      Conserved Domains (1) summary
      pfam15678
      Location:36 → 419
      SPICE; Centriole duplication and mitotic chromosome congression

    2. XM_012956517.1 → XP_012811971.1  spindle and centriole-associated protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A6I8PWW9
      Related
      ENSXETP00000060303.2, ENSXETT00000065807.3
      Conserved Domains (1) summary
      pfam15678
      Location:43 → 428
      SPICE; Centriole duplication and mitotic chromosome congression

    3. XM_012956516.1 → XP_012811970.1  spindle and centriole-associated protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8J0SEU5
      Conserved Domains (1) summary
      pfam15678
      Location:43 → 428
      SPICE; Centriole duplication and mitotic chromosome congression

    4. XM_012956515.3 → XP_012811969.1  spindle and centriole-associated protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8J0SDT3
      Conserved Domains (1) summary
      pfam15678
      Location:43 → 428
      SPICE; Centriole duplication and mitotic chromosome congression

    5. XM_031895713.1 → XP_031751573.1  spindle and centriole-associated protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A8J0S766
      Conserved Domains (1) summary
      pfam15678
      Location:36 → 419
      SPICE; Centriole duplication and mitotic chromosome congression

    6. XM_031895712.1 → XP_031751572.1  spindle and centriole-associated protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A8J0S766
      Conserved Domains (1) summary
      pfam15678
      Location:36 → 419
      SPICE; Centriole duplication and mitotic chromosome congression
    Nucleotide Protein Strain
    Heading Accession and Version

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