zdhhc23a zinc finger DHHC-type palmitoyltransferase 23a [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: zdhhc23aprovided by ZNC
Official Full Name: zinc finger DHHC-type palmitoyltransferase 23aprovided by ZNC
Primary source: ZFIN:ZDB-GENE-060526-38
See related: Ensembl:ENSDARG00000029039 AllianceGenome:ZFIN:ZDB-GENE-060526-38
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: si:ch211-137i24.2
Summary: Predicted to enable protein-cysteine S-palmitoyltransferase activity. Predicted to be involved in protein localization to plasma membrane and protein targeting to membrane. Predicted to be located in Golgi membrane. Predicted to be active in Golgi apparatus and endoplasmic reticulum. Orthologous to human ZDHHC23 (zinc finger DHHC-type palmitoyltransferase 23). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs: all
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Genomic context

Location:: chromosome: 5

Exon count:: 12

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	5	NC_007116.7 (24279538..24303366)
105	previous assembly	GRCz10 (GCF_000002035.5)	5	NC_007116.6 (23775196..23799192)

Chromosome 5 - NC_007116.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables acyltransferase activity	IEA Inferred from Electronic Annotation more info
enables palmitoyltransferase activity	IEA Inferred from Electronic Annotation more info
enables protein-cysteine S-palmitoyltransferase activity	IBA Inferred from Biological aspect of Ancestor more info
enables protein-cysteine S-palmitoyltransferase activity	IEA Inferred from Electronic Annotation more info
enables transferase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in protein localization to plasma membrane	IBA Inferred from Biological aspect of Ancestor more info
involved_in protein targeting to membrane	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in Golgi apparatus	IBA Inferred from Biological aspect of Ancestor more info
located_in Golgi apparatus	IEA Inferred from Electronic Annotation more info
located_in Golgi membrane	IEA Inferred from Electronic Annotation more info
is_active_in endoplasmic reticulum	IBA Inferred from Biological aspect of Ancestor more info
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: palmitoyltransferase ZDHHC23-A

Names: zinc finger DHHC domain-containing protein 23-A; zinc finger DHHC-type containing 23a

NP_001410766.1

EC 2.3.1.225

XP_021332137.1

EC 2.3.1.225

XP_068077160.1

EC 2.3.1.225

XP_068077161.1

EC 2.3.1.225

XP_068077162.1

EC 2.3.1.225

XP_068077163.1

EC 2.3.1.225

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001423837.1 → NP_001410766.1 palmitoyltransferase ZDHHC23-A

Status: VALIDATED

Source sequence(s)

BX119902, GDQH01031119, GFIL01044031

UniProtKB/TrEMBL

A0A8M9Q9C3

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007116.7 Reference GRCz11 Primary Assembly

Range

24279538..24303366

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_068221061.1 → XP_068077162.1 palmitoyltransferase ZDHHC23-A isoform X2
XM_068221062.1 → XP_068077163.1 palmitoyltransferase ZDHHC23-A isoform X3
XM_068221060.1 → XP_068077161.1 palmitoyltransferase ZDHHC23-A isoform X1

Related

ENSDARP00000113952.1, ENSDART00000143563.2
XM_068221059.1 → XP_068077160.1 palmitoyltransferase ZDHHC23-A isoform X1
XM_021476462.2 → XP_021332137.1 palmitoyltransferase ZDHHC23-A isoform X4

UniProtKB/TrEMBL

A0A8M9PKZ1

Related

ENSDARP00000041904.6, ENSDART00000041905.6

Conserved Domains (1) summary

cl19890
Location:126 → 271

zf-DHHC; DHHC palmitoyltransferase