arfgap1 ADP-ribosylation factor GTPase activating protein 1 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: arfgap1provided by ZNC
Official Full Name: ADP-ribosylation factor GTPase activating protein 1provided by ZNC
Primary source: ZFIN:ZDB-GENE-041114-130
See related: Ensembl:ENSDARG00000101616 AllianceGenome:ZFIN:ZDB-GENE-041114-130
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: zgc:92804; wu:fj34h02
Summary: Predicted to enable GTPase activator activity and metal ion binding activity. Orthologous to human ARFGAP1 (ADP ribosylation factor GTPase activating protein 1). [provided by Alliance of Genome Resources, Nov 2024]
Annotation information: Annotation category: partial on reference assembly
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 11

Exon count:: 14

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	11	NC_007122.7 (109274..129165, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	11	NC_007122.6 (106044..110163, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	Unplaced Scaffold	NW_008805421.1 (237..2001)
105	previous assembly	GRCz10 (GCF_000002035.5)	Unplaced Scaffold	NW_008805560.1 (477..2051)
105	previous assembly	GRCz10 (GCF_000002035.5)	Unplaced Scaffold	NW_008805576.1 (244..631, complement)

Chromosome 11 - NC_007122.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fj34h02.x1 (e-PCR)
- UniSTS:199168

G39111 (e-PCR)
- UniSTS:52266

G45993 (e-PCR)
- UniSTS:106795

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables GTPase activator activity	IEA Inferred from Electronic Annotation more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: ADP-ribosylation factor GTPase-activating protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001007303.1 → NP_001007304.1 ADP-ribosylation factor GTPase-activating protein 1

See identical proteins and their annotated locations for NP_001007304.1

Status: PROVISIONAL

Source sequence(s)

BC085678

UniProtKB/TrEMBL

Q5U370

Related

ENSDARP00000141429.2, ENSDART00000162658.2

Conserved Domains (2) summary

pfam01412
Location:7 → 114

ArfGap; Putative GTPase activating protein for Arf

cl02777
Location:194 → 277

chaperonin_like; chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I ...