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    tctn1 tectonic family member 1 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100145811, updated on 8-Mar-2024

    Summary

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    Official Symbol
    tctn1provided by Xenbase
    Official Full Name
    tectonic family member 1provided by Xenbase
    Primary source
    Xenbase:XB-GENE-5886876
    See related
    Ensembl:ENSXETG00000024479
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Orthologs
    human mouse all
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    Genomic context

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    See tctn1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 1 NC_030677.2 (162885064..162910978)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 1 NC_030677.1 (154235732..154261037)

    Chromosome 1 - NC_030677.2Genomic Context describing neighboring genes Neighboring gene RAD9 checkpoint clamp component B Neighboring gene PTC7 protein phosphatase homolog Neighboring gene hydrogen voltage gated channel 1 Neighboring gene protein phosphatase 1, catalytic subunit, gamma isozyme Neighboring gene aldehyde dehydrogenase 2 family member

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Process Evidence Code Pubs
    acts_upstream_of_or_within cell projection organization IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    tectonic-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001127166.2 → NP_001120638.1  tectonic-1 precursor

      See identical proteins and their annotated locations for NP_001120638.1

      Status: PROVISIONAL

      Source sequence(s)
      CR761060
      UniProtKB/TrEMBL
      F6SHP4, Q07G70
      Related
      ENSXETP00000105526.1, ENSXETT00000114435.1
      Conserved Domains (1) summary
      pfam07773
      Location:203 → 501
      DUF1619; Protein of unknown function (DUF1619)

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030677.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      162885064..162910978
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031895865.1 → XP_031751725.1  tectonic-1 isoform X1

      UniProtKB/TrEMBL
      A0A8J1J3Y3, F6SHP4
      Conserved Domains (1) summary
      pfam07773
      Location:197 → 421
      DUF1619; Protein of unknown function (DUF1619)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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