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    abhd6 abhydrolase domain containing 6 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100145783, updated on 4-Nov-2024

    Summary

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    Official Symbol
    abhd6provided by Xenbase
    Official Full Name
    abhydrolase domain containing 6provided by Xenbase
    Primary source
    Xenbase:XB-GENE-966285
    See related
    Ensembl:ENSXETG00000008670 AllianceGenome:Xenbase:XB-GENE-966285
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    abhd6-a; abhd6-b
    Summary
    Predicted to be located in membrane. Orthologous to human ABHD6 (abhydrolase domain containing 6, acylglycerol lipase). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See abhd6 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 4 NC_030680.2 (148405657..148420233)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) Unplaced Scaffold NW_016683423.1 (401903..411275, complement)

    Chromosome 4 - NC_030680.2Genomic Context describing neighboring genes Neighboring gene protein ATP6V1FNB Neighboring gene deoxyribonuclease 1l3 Neighboring gene uncharacterized LOC100497741 Neighboring gene uncharacterized LOC101732277

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    monoacylglycerol lipase ABHD6
    NP_001120619.1
    XP_031755727.1
    XP_031755728.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001127147.1 → NP_001120619.1  monoacylglycerol lipase ABHD6

      See identical proteins and their annotated locations for NP_001120619.1

      Status: PROVISIONAL

      Source sequence(s)
      BC161759
      UniProtKB/TrEMBL
      B1WBH7, F6RFF6
      Conserved Domains (2) summary
      COG0596
      Location:52 → 328
      MhpC; Pimeloyl-ACP methyl ester carboxylesterase [Coenzyme transport and metabolism, General function prediction only]
      cl21494
      Location:70 → 160
      Abhydrolase; alpha/beta hydrolases

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030680.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      148405657..148420233
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031899867.1 → XP_031755727.1  monoacylglycerol lipase ABHD6 isoform X1

      UniProtKB/TrEMBL
      A0A6I8SCU7, F6RFF6
      Related
      ENSXETP00000094829.2, ENSXETT00000070365.2
      Conserved Domains (1) summary
      pfam00561
      Location:72 → 314
      Abhydrolase_1; alpha/beta hydrolase fold

    2. XM_031899868.1 → XP_031755728.1  monoacylglycerol lipase ABHD6 isoform X2

      UniProtKB/TrEMBL
      A0A8J1JCW3, F6RFF6
      Conserved Domains (1) summary
      pfam00561
      Location:25 → 267
      Abhydrolase_1; alpha/beta hydrolase fold
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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