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    lgals9c lectin, galactoside-binding, soluble, 9C [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100145704, updated on 4-Nov-2024

    Summary

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    Official Symbol
    lgals9cprovided by Xenbase
    Official Full Name
    lectin, galactoside-binding, soluble, 9Cprovided by Xenbase
    Primary source
    Xenbase:XB-GENE-988896
    See related
    Ensembl:ENSXETG00000007928 AllianceGenome:Xenbase:XB-GENE-988896
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    lgals9c-a; lgals9c-b
    Summary
    Predicted to enable carbohydrate binding activity. Orthologous to several human genes including LGALS9 (galectin 9) and LGALS9B (galectin 9B). [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See lgals9c in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 3 NC_030679.2 (139776862..139839057)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 3 NC_030679.1 (128880841..128940709)

    Chromosome 3 - NC_030679.2Genomic Context describing neighboring genes Neighboring gene synaptonemal complex central element protein 2 Neighboring gene glutaryl-CoA dehydrogenase Neighboring gene galectin-9 Neighboring gene uncharacterized LOC116409503 Neighboring gene uncharacterized LOC116409566

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    galectin 9
    Names
    xgalectin-III

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001127078.1 → NP_001120550.1  galectin 9

      See identical proteins and their annotated locations for NP_001120550.1

      Status: PROVISIONAL

      Source sequence(s)
      BC161481
      UniProtKB/TrEMBL
      B1WAS4, F6V0F6
      Related
      ENSXETP00000017380.4, ENSXETT00000017380.5
      Conserved Domains (2) summary
      smart00908
      Location:311 → 431
      Gal-bind_lectin; Galactoside-binding lectin
      cd00070
      Location:2 → 128
      GLECT; Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as lactose, and does not require metal ions for activity. GLECT domains occur as homodimers or tandemly repeated domains. They are developmentally regulated and may ...

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030679.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      139776862..139839057
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012953145.2 → XP_012808599.1  galectin 9 isoform X1

      UniProtKB/TrEMBL
      F6V0D0, F6V0F6
      Related
      ENSXETP00000017384.3, ENSXETT00000017384.5
      Conserved Domains (2) summary
      smart00908
      Location:322 → 442
      Gal-bind_lectin; Galactoside-binding lectin
      cd00070
      Location:13 → 139
      GLECT; Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as lactose, and does not require metal ions for activity. GLECT domains occur as homodimers or tandemly repeated domains. They are developmentally regulated and may ...
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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