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    pttg1ip pituitary tumor-transforming 1 interacting protein, gene 1 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100145604, updated on 4-Nov-2024

    Summary

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    Official Symbol
    pttg1ipprovided by Xenbase
    Official Full Name
    pituitary tumor-transforming 1 interacting protein, gene 1provided by Xenbase
    Primary source
    Xenbase:XB-GENE-954066
    See related
    Ensembl:ENSXETG00000013285 AllianceGenome:Xenbase:XB-GENE-954066
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    pttg1ip.1
    Summary
    Predicted to be located in membrane. Orthologous to human LYSMD1 (LysM domain containing 1) and PTTG1IP (PTTG1 interacting protein). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See pttg1ip in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 9 NC_030685.2 (55102876..55117253, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 9 NC_030685.1 (50327874..50341958, complement)

    Chromosome 9 - NC_030685.2Genomic Context describing neighboring genes Neighboring gene ubiquitin conjugating enzyme E2 G2 Neighboring gene small ubiquitin like modifier 3 Neighboring gene integrin subunit beta 2 Neighboring gene SLX9 ribosome biogenesis factor

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by Xenbase

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    pituitary tumor-transforming gene 1 protein-interacting protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001127014.2 → NP_001120486.2  pituitary tumor-transforming gene 1 protein-interacting protein precursor

      Status: VALIDATED

      Source sequence(s)
      BC161358, BG487379, CX496234
      UniProtKB/TrEMBL
      B1H3D8, F6PNX9, F6PP40, F6U136, F7DV27, F7ECU5
      Related
      ENSXETP00000044210.4, ENSXETT00000044210.5
      Conserved Domains (1) summary
      PHA03027
      Location:35 → 112
      PHA03027; hypothetical protein; Provisional

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030685.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      55102876..55117253 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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