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    tmem60 transmembrane protein 60 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100144982, updated on 17-Aug-2024

    Summary

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    Official Symbol
    tmem60provided by Xenbase
    Official Full Name
    transmembrane protein 60provided by Xenbase
    Primary source
    Xenbase:XB-GENE-942110
    See related
    Ensembl:ENSXETG00000025693
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 3 NC_030679.2 (78342891..78349394, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 3 NC_030679.1 (68748017..68754515, complement)

    Chromosome 3 - NC_030679.2Genomic Context describing neighboring genes Neighboring gene protein tyrosine phosphatase non-receptor type 12 Neighboring gene round spermatid basic protein 1 like Neighboring gene putative homeodomain transcription factor 2 Neighboring gene membrane associated guanylate kinase, WW and PDZ domain containing 2 Neighboring gene uncharacterized LOC105946850

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    transmembrane protein 60

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001126548.1 → NP_001120020.1  transmembrane protein 60

      See identical proteins and their annotated locations for NP_001120020.1

      Status: PROVISIONAL

      Source sequence(s)
      BC158320
      UniProtKB/TrEMBL
      B0BM78, F6QQY2
      Conserved Domains (1) summary
      pfam10269
      Location:25 → 112
      Tmemb_185A; Transmembrane Fragile-X-F protein

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030679.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      78342891..78349394 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012958541.3 → XP_012813995.1  transmembrane protein 60 isoform X1

      See identical proteins and their annotated locations for XP_012813995.1

      UniProtKB/TrEMBL
      B0BM78, F6QQY2
      Related
      ENSXETP00000054600.2, ENSXETT00000054600.4
      Conserved Domains (1) summary
      pfam10269
      Location:25 → 112
      Tmemb_185A; Transmembrane Fragile-X-F protein
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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