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    nfyb nuclear transcription factor Y subunit beta [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100135753, updated on 17-Aug-2024

    Summary

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    Official Symbol
    nfybprovided by Xenbase
    Official Full Name
    nuclear transcription factor Y subunit betaprovided by Xenbase
    Primary source
    Xenbase:XB-GENE-1006106
    See related
    Ensembl:ENSXETG00000019656
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    hap3; NF-YB; cbf-a; cbf-b
    Orthologs
    human mouse all
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    Genomic context

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    See nfyb in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 3 NC_030679.2 (49880982..49892062, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 3 NC_030679.1 (40355696..40366864, complement)

    Chromosome 3 - NC_030679.2Genomic Context describing neighboring genes Neighboring gene deoxyguanosine kinase Neighboring gene host cell factor C2 Neighboring gene thioredoxin reductase 1 Neighboring gene carbohydrate (chondroitin 4) sulfotransferase 11

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein heterodimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of CCAAT-binding factor complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    nuclear transcription factor Y subunit beta
    Names
    nuclear transcription factor Y, beta

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030679.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      49880982..49892062 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002938072.4 → XP_002938118.2  nuclear transcription factor Y subunit beta isoform X1

      UniProtKB/TrEMBL
      A0A6I8RVI7
      Related
      ENSXETP00000086730.1, ENSXETT00000101176.2
      Conserved Domains (1) summary
      pfam00808
      Location:120 → 183
      CBFD_NFYB_HMF; Histone-like transcription factor (CBF/NF-Y) and archaeal histone

    2. XM_018092228.2 → XP_017947717.1  nuclear transcription factor Y subunit beta isoform X2

      UniProtKB/TrEMBL
      A0A8J0T172, F6W6W6
      Conserved Domains (1) summary
      pfam00808
      Location:58 → 121
      CBFD_NFYB_HMF; Histone-like transcription factor (CBF/NF-Y) and archaeal histone

    3. XM_002938074.5 → XP_002938120.1  nuclear transcription factor Y subunit beta isoform X2

      UniProtKB/TrEMBL
      A0A8J0T172, F6W6W6
      Conserved Domains (1) summary
      pfam00808
      Location:58 → 121
      CBFD_NFYB_HMF; Histone-like transcription factor (CBF/NF-Y) and archaeal histone
    Nucleotide Protein Strain
    Heading Accession and Version

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