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    snap23 synaptosome associated protein 23kDa [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100135161, updated on 8-Mar-2024

    Summary

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    Official Symbol
    snap23provided by Xenbase
    Official Full Name
    synaptosome associated protein 23kDaprovided by Xenbase
    Primary source
    Xenbase:XB-GENE-942565
    See related
    Ensembl:ENSXETG00000000056
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Orthologs
    human mouse all
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    Genomic context

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    See snap23 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 8 NC_030684.2 (105558891..105580556, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 8 NC_030684.1 (85240796..85265549, complement)

    Chromosome 8 - NC_030684.2Genomic Context describing neighboring genes Neighboring gene RNA polymerase II associated protein 1 Neighboring gene leukocyte receptor tyrosine kinase Neighboring gene acyl-CoA thioesterase 2 Neighboring gene HEAT repeat containing 4 Neighboring gene HAUS augmin like complex subunit 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Component Evidence Code Pubs
    located_in neuron projection IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in synapse IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    synaptosomal-associated protein 23
    Names
    synaptosomal-associated protein, 23kDa

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001113868.1 → NP_001107340.1  synaptosomal-associated protein 23

      See identical proteins and their annotated locations for NP_001107340.1

      Status: PROVISIONAL

      Source sequence(s)
      BC157148
      UniProtKB/TrEMBL
      A9UL74, F6UBJ8
      Related
      ENSXETP00000000093.3, ENSXETT00000000093.4
      Conserved Domains (3) summary
      cd15884
      Location:144 → 202
      SNARE_SNAP23C; C-terminal SNARE motif of SNAP23
      pfam00835
      Location:86 → 143
      SNAP-25; SNAP-25 family
      cl22856
      Location:9 → 75
      SNARE; SNARE motif

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030684.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      105558891..105580556 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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