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    casz1 castor zinc finger 1 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100127676, updated on 17-Aug-2024

    Summary

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    Official Symbol
    casz1provided by Xenbase
    Official Full Name
    castor zinc finger 1provided by Xenbase
    Primary source
    Xenbase:XB-GENE-957461
    See related
    Ensembl:ENSXETG00000006312
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    cst; srg; csta; cstb; castor; znf693
    Orthologs
    human mouse all
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    Genomic context

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    See casz1 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 7 NC_030683.2 (64212769..64493485, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 7 NC_030683.1 (39070501..39353707, complement)

    Chromosome 7 - NC_030683.2Genomic Context describing neighboring genes Neighboring gene DNA fragmentation factor, 45kDa, alpha polypeptide Neighboring gene peroxisomal biogenesis factor 14 Neighboring gene uncharacterized LOC116412255 Neighboring gene uncharacterized LOC105947775 Neighboring gene uncharacterized LOC101731286 Neighboring gene chromosome 7 C1orf127 homolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Vertebrate CASTOR is required for differentiation of cardiac precursor cells at the ventral midline. Christine KS, et al. Dev Cell, 2008 Apr. PMID 18410736, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    castor zinc finger 1; zinc finger protein castor homolog 1
    Names
    castor-alpha
    castor-beta

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030683.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      64212769..64493485 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012966970.3 → XP_012822424.2  zinc finger protein castor homolog 1 isoform X3

      UniProtKB/TrEMBL
      A0A6I8QG74, F6TTS0
      Related
      ENSXETP00000013829.4, ENSXETT00000013829.4
      Conserved Domains (1) summary
      pfam05109
      Location:739 → 943
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

    2. XM_018095836.2 → XP_017951325.2  zinc finger protein castor homolog 1 isoform X5

      UniProtKB/TrEMBL
      A0A6I8Q7U8, A0A6I8QG74
      Related
      ENSXETP00000065540.2, ENSXETT00000094961.2
      Conserved Domains (1) summary
      pfam05109
      Location:770 → 974
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

    3. XM_012966967.3 → XP_012822421.2  zinc finger protein castor homolog 1 isoform X2

      UniProtKB/TrEMBL
      A0A6I8QG74, A0A8J0SRE4
      Conserved Domains (1) summary
      pfam05109
      Location:770 → 974
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

    4. XM_012966965.3 → XP_012822419.2  zinc finger protein castor homolog 1 isoform X1

      UniProtKB/TrEMBL
      A0A6I8QG74, A0A8J0SUE1
      Conserved Domains (1) summary
      pfam05109
      Location:779 → 983
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

    5. XM_018095835.2 → XP_017951324.2  zinc finger protein castor homolog 1 isoform X4

      UniProtKB/TrEMBL
      A0A6I8QG74, A0A8J0SVI0
      Conserved Domains (1) summary
      pfam05109
      Location:779 → 983
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001113014.1: Suppressed sequence

      Description
      NM_001113014.1: This RefSeq was suppressed temporarily based on the calculation that the encoded protein was shorter than proteins from the putative ortholog from human: CASZ1 (GeneID:54897).
    Nucleotide Protein Strain
    Heading Accession and Version

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