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    tcp11l1 t-complex 11, testis-specific-like 1 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100127643, updated on 4-Nov-2024

    Summary

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    Official Symbol
    tcp11l1provided by Xenbase
    Official Full Name
    t-complex 11, testis-specific-like 1provided by Xenbase
    Primary source
    Xenbase:XB-GENE-5887205
    See related
    Ensembl:ENSXETG00000017957 AllianceGenome:Xenbase:XB-GENE-5887205
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Summary
    Orthologous to human TCP11L1 (t-complex 11 like 1). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See tcp11l1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 4 NC_030680.2 (18507350..18519976, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 4 NC_030680.1 (9306800..9319174, complement)

    Chromosome 4 - NC_030680.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116410301 Neighboring gene homeodomain interacting protein kinase 3 Neighboring gene DEP domain containing 7 Neighboring gene glutamine and serine rich 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    T-complex protein 11-like protein 1
    Names
    t-complex 11-like 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001112989.1 → NP_001106460.1  T-complex protein 11-like protein 1

      See identical proteins and their annotated locations for NP_001106460.1

      Status: PROVISIONAL

      Source sequence(s)
      BC154074
      UniProtKB/TrEMBL
      A8KBD8
      Related
      ENSXETP00000038942.5, ENSXETT00000038942.5
      Conserved Domains (1) summary
      pfam05794
      Location:74 → 494
      Tcp11; T-complex protein 11

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030680.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      18507350..18519976 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012960518.3 → XP_012815972.2  T-complex protein 11-like protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A6I8SF60
      Related
      ENSXETP00000091098.2, ENSXETT00000092130.2
      Conserved Domains (1) summary
      pfam05794
      Location:74 → 494
      Tcp11; T-complex protein 11
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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