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    LOC100125650 barren inflorescence 2 [ Zea mays ]

    Gene ID: 100125650, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC100125650
    Gene description
    barren inflorescence 2
    Locus tag
    ZEAMMB73_Zm00001d031068
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    bif2; GRMZM2G171822
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    Genomic context

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    See LOC100125650 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 1 NC_050096.1 (177940567..177942323)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 1 NC_024459.2 (175807736..175809492)

    Chromosome 1 - NC_050096.1Genomic Context describing neighboring genes Neighboring gene U2 spliceosomal RNA Neighboring gene uncharacterized LOC118476079 Neighboring gene DNA polymerase eta Neighboring gene uncharacterized LOC100284931

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Natural variation in maize architecture is mediated by allelic differences at the PINOID co-ortholog barren inflorescence2. Pressoir G, et al. Plant J, 2009 May. PMID 19154226
    2. barren inflorescence2 Encodes a co-ortholog of the PINOID serine/threonine kinase and is required for organogenesis during inflorescence and vegetative development in maize. McSteen P, et al. Plant Physiol, 2007 Jun. PMID 17449648, Free PMC Article
    3. BARREN INFLORESCENCE2 interaction with ZmPIN1a suggests a role in auxin transport during maize inflorescence development. Skirpan A, et al. Plant Cell Physiol, 2009 Mar. PMID 19153156
    4. Genetic and physical interaction suggest that BARREN STALK 1 is a target of BARREN INFLORESCENCE2 in maize inflorescence development. Skirpan A, et al. Plant J, 2008 Sep. PMID 18466309
    5. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Allelic variation at bif2 is associated with maize architectural diversity.
      Title: Natural variation in maize architecture is mediated by allelic differences at the PINOID co-ortholog barren inflorescence2.
    2. BIF2 regulates auxin transport through direct regulation of ZmPIN1a during maize inflorescence development.
      Title: BARREN INFLORESCENCE2 interaction with ZmPIN1a suggests a role in auxin transport during maize inflorescence development.
    3. BIF2 phosphorylates BA1. Both co-localize in the nucleus and both are expressed during axillary meristem initiation. This interaction is important for inflorescence development.
      Title: Genetic and physical interaction suggest that BARREN STALK 1 is a target of BARREN INFLORESCENCE2 in maize inflorescence development.
    4. results support that bif2 is required for initiation of both axillary meristems and lateral primordia
      Title: barren inflorescence2 Encodes a co-ortholog of the PINOID serine/threonine kinase and is required for organogenesis during inflorescence and vegetative development in maize.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    barren inflorescence 2
    Names
    Protein kinase PINOID
    ba*-1447
    ba*-74-369-2
    bif*-47330
    bif*-N2354

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001112581.1 → NP_001106051.1  barren inflorescence 2

      See identical proteins and their annotated locations for NP_001106051.1

      Status: PROVISIONAL

      Source sequence(s)
      EF532402
      UniProtKB/TrEMBL
      A0A317YAE3, A6MW92
      Conserved Domains (1) summary
      cl21453
      Location:124 → 458
      PKc_like; Protein Kinases, catalytic domain

    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050096.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      177940567..177942323
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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