ccnl1 cyclin L1 [Xenopus tropicalis (tropical clawed frog)] - Gene

Summary

Official Symbol: ccnl1provided by Xenbase
Official Full Name: cyclin L1provided by Xenbase
Primary source: Xenbase:XB-GENE-492287
See related: Ensembl:ENSXETG00000012250
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus tropicalis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as: bm-001; ania-6a; pro1073
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 5

Exon count:: 11

Annotation release	Status	Assembly	Chr	Location
104	current	UCB_Xtro_10.0 (GCF_000004195.4)	5	NC_030681.2 (115961155..115983267)
103	previous assembly	Xenopus_tropicalis_v9.1 (GCF_000004195.3)	5	NC_030681.1 (104528462..104550574)

Chromosome 5 - NC_030681.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables cyclin-dependent protein serine/threonine kinase regulator activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within regulation of transcription by RNA polymerase II	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in nuclear speck	IEA Inferred from Electronic Annotation more info
located_in nucleoplasm	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: cyclin-L1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001142906.1 → NP_001136378.1 cyclin-L1

See identical proteins and their annotated locations for NP_001136378.1

Status: PROVISIONAL

Source sequence(s)

BC161176

UniProtKB/TrEMBL

A0A6I8S6P1, B1H2Y3

Related

ENSXETP00000088844.2, ENSXETT00000066533.2

Conserved Domains (1) summary

smart00385
Location:1 → 54

CYCLIN; domain present in cyclins, TFIIB and Retinoblastoma

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

NC_030681.2 Reference UCB_Xtro_10.0 Primary Assembly

Range

115961155..115983267

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_012962551.3 → XP_012818005.1 cyclin-L1 isoform X1

UniProtKB/TrEMBL

B0BMI4, F6VK61

Related

ENSXETP00000026772.5, ENSXETT00000026772.5

Conserved Domains (1) summary

COG5333
Location:54 → 256

CCL1; Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]