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    si:dkey-266f7.9 si:dkey-266f7.9 [ Danio rerio (zebrafish) ]

    Gene ID: 100006223, updated on 2-Nov-2024

    Summary

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    Official Symbol
    si:dkey-266f7.9provided by ZNC
    Official Full Name
    si:dkey-266f7.9provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-070705-440
    See related
    Ensembl:ENSDARG00000075958 AllianceGenome:ZFIN:ZDB-GENE-070705-440
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to enable phosphoric diester hydrolase activity. Predicted to act upstream of or within lipid metabolic process. [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    all
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    Genomic context

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    See si:dkey-266f7.9 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (8086425..8097111, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (8167566..8178059, complement)

    Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene si:dkey-266f7.5 Neighboring gene uncharacterized LOC110438134 Neighboring gene ephrin-A3a Neighboring gene uncharacterized LOC137488470 Neighboring gene uncharacterized LOC137488471

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables phosphatidylinositol diacylglycerol-lyase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables phosphoric diester hydrolase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables phosphoric diester hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within lipid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC100006223
    NP_001121840.1
    XP_021323638.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001128368.1 → NP_001121840.1  uncharacterized protein LOC100006223

      See identical proteins and their annotated locations for NP_001121840.1

      Status: PREDICTED

      Source sequence(s)
      CR936442
      UniProtKB/TrEMBL
      A0A8M1NHC8, A5WV54
      Related
      ENSDARP00000114245.1, ENSDART00000146987.2
      Conserved Domains (1) summary
      cd08586
      Location:46 → 298
      PI-PLCc_BcPLC_like; Catalytic domain of Bacillus cereus phosphatidylinositol-specific phospholipases C and similar proteins

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007130.7 Reference GRCz11 Primary Assembly

      Range
      8086425..8097111 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021467963.2 → XP_021323638.1  uncharacterized protein LOC100006223 isoform X1

      UniProtKB/TrEMBL
      A0A8M1NHC8, A5WV54
      Conserved Domains (1) summary
      cd08586
      Location:46 → 298
      PI-PLCc_BcPLC_like; Catalytic domain of Bacillus cereus phosphatidylinositol-specific phospholipases C and similar proteins
    Nucleotide Protein Strain
    Heading Accession and Version

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