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    si:dkey-166k12.1 si:dkey-166k12.1 [ Danio rerio (zebrafish) ]

    Gene ID: 100001249, updated on 12-Sep-2024

    Summary

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    Official Symbol
    si:dkey-166k12.1provided by ZNC
    Official Full Name
    si:dkey-166k12.1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-120215-78
    See related
    Ensembl:ENSDARG00000054690 AllianceGenome:ZFIN:ZDB-GENE-120215-78
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to enable transmembrane transporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    See si:dkey-166k12.1 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (42469116..42491043)
    105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (42899570..42915694)

    Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene pogo transposable element derived with ZNF domain a Neighboring gene proteasome 20S subunit beta 4 Neighboring gene zgc:110239 Neighboring gene uncharacterized LOC137488550 Neighboring gene zgc:123103

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    organic cation transporter protein; solute carrier family 22 member 13

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007130.7 Reference GRCz11 Primary Assembly

      Range
      42469116..42491043
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001341251.6 → XP_001341287.1  solute carrier family 22 member 13 isoform X1

      UniProtKB/TrEMBL
      A0A8M1Q1Y8, E7FBR6
      Related
      ENSDARP00000071383.4, ENSDART00000076915.5
      Conserved Domains (2) summary
      cd06174
      Location:123 → 458
      MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
      TIGR00898
      Location:11 → 497
      2A0119; cation transport protein

    2. XM_068215326.1 → XP_068071427.1  organic cation transporter protein isoform X2

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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