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    LOC120075295 pentatricopeptide repeat-containing protein At5g04780, mitochondrial [ Benincasa hispida (wax gourd) ]

    Gene ID: 120075295, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC120075295
    Gene description
    pentatricopeptide repeat-containing protein At5g04780, mitochondrial
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Benincasa hispida
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Benincasa
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    Genomic context

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    See LOC120075295 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    100 current ASM972705v1 (GCF_009727055.1) 4 NC_052352.1 (41484042..41494685, complement)

    Chromosome 4 - NC_052352.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120076204 Neighboring gene 40S ribosomal protein S17-4 Neighboring gene cationic amino acid transporter 7, chloroplastic-like Neighboring gene transcription factor DIVARICATA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_052352.1 Chromosome 4 Reference ASM972705v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA modification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pentatricopeptide repeat-containing protein At5g04780, mitochondrial

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Benincasa hispida Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM972705v1

    Genomic

    1. NC_052352.1 Reference ASM972705v1

      Range
      41484042..41494685 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039028532.1 → XP_038884460.1  pentatricopeptide repeat-containing protein At5g04780, mitochondrial

      Conserved Domains (2) summary
      PLN03081
      Location:63 → 641
      PLN03081; pentatricopeptide (PPR) repeat-containing protein; Provisional
      sd00004
      Location:337 → 364
      PPR; PPR repeat [structural motif]

    2. XM_039028533.1 → XP_038884461.1  pentatricopeptide repeat-containing protein At5g04780, mitochondrial

      Conserved Domains (2) summary
      PLN03081
      Location:63 → 641
      PLN03081; pentatricopeptide (PPR) repeat-containing protein; Provisional
      sd00004
      Location:337 → 364
      PPR; PPR repeat [structural motif]

    3. XM_039028531.1 → XP_038884459.1  pentatricopeptide repeat-containing protein At5g04780, mitochondrial

      Conserved Domains (2) summary
      PLN03081
      Location:63 → 641
      PLN03081; pentatricopeptide (PPR) repeat-containing protein; Provisional
      sd00004
      Location:337 → 364
      PPR; PPR repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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