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    LOC111787436 methyl-CpG-binding domain-containing protein 5-like [ Cucurbita pepo subsp. pepo (vegetable marrow) ]

    Gene ID: 111787436, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC111787436
    Gene description
    methyl-CpG-binding domain-containing protein 5-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucurbita pepo subsp. pepo (sub-species: pepo)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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    Genomic context

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    See LOC111787436 in Genome Data Viewer
    Location:
    chromosome: LG02
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    100 current ASM280686v2 (GCF_002806865.1) LG02 NC_036639.1 (11097608..11100529, complement)

    Chromosome LG02 - NC_036639.1Genomic Context describing neighboring genes Neighboring gene probable serine/threonine-protein kinase PBL10 Neighboring gene transfer RNA lysine (anticodon UUU) Neighboring gene glucan endo-1,3-beta-glucosidase-like Neighboring gene RING-H2 finger protein ATL66-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_036639.1 Chromosome LG02 Reference ASM280686v2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    methyl-CpG-binding domain-containing protein 5-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucurbita pepo subsp. pepo Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM280686v2 Primary Assembly

    Genomic

    1. NC_036639.1 Reference ASM280686v2 Primary Assembly

      Range
      11097608..11100529 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023667394.1 → XP_023523162.1  methyl-CpG-binding domain-containing protein 5-like

      Conserved Domains (1) summary
      cl00110
      Location:127 → 172
      MBD; MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and BAZ2A-like proteins constitute a family of proteins that share the methyl-CpG-binding domain (MBD). The MBD consists of about 70 residues and is defined as the minimal region required for binding to ...
    Nucleotide Protein
    Heading Accession and Version

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