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    LOC110811416 heat stress transcription factor A-1d [ Carica papaya (papaya) ]

    Gene ID: 110811416, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC110811416
    Gene description
    heat stress transcription factor A-1d
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Carica papaya
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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    Genomic context

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    See LOC110811416 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    100 current Papaya1.0 (GCF_000150535.2) Unplaced Scaffold NW_019014602.1 (352706..356266)

    NW_019014602.1Genomic Context describing neighboring genes Neighboring gene protein SAMBA Neighboring gene phosphatidylinositol-glycan biosynthesis class X protein Neighboring gene mitogen-activated protein kinase kinase 10-like Neighboring gene E3 ubiquitin-protein ligase RNF14

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_019014602 Unplaced Scaffold Reference Papaya1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    heat stress transcription factor A-1d

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Carica papaya Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Papaya1.0 Primary Assembly

    Genomic

    1. NW_019014602.1 Reference Papaya1.0 Primary Assembly

      Range
      352706..356266
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_022037915.1 → XP_021893607.1  heat stress transcription factor A-1d

      Conserved Domains (2) summary
      smart00415
      Location:38 → 130
      HSF; heat shock factor
      cl25732
      Location:162 → 280
      SMC_N; RecF/RecN/SMC N terminal domain
    Nucleotide Protein
    Heading Accession and Version

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