U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC107420827 uncharacterized LOC107420827 [ Ziziphus jujuba (common jujube) ]

    Gene ID: 107420827, updated on 30-Nov-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC107420827
    Gene description
    uncharacterized LOC107420827
    Locus tag
    FEM48_Zijuj06G0116700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ziziphus jujuba
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC107420827 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2023_10 current ASM3175591v1 (GCF_031755915.1) 5 NC_083383.1 (11749024..11753224, complement)
    101 previous assembly ZizJuj_1.1 (GCF_000826755.1) 6 NC_029684.1 (9430168..9434579, complement)

    Chromosome 5 - NC_083383.1Genomic Context describing neighboring genes Neighboring gene uncharacterized methyltransferase At1g78140, chloroplastic Neighboring gene transfer RNA lysine (anticodon CUU) Neighboring gene uncharacterized LOC107420863 Neighboring gene TPR repeat-containing thioredoxin TTL1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    uncharacterized protein LOC107420827

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_031755915.1-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3175591v1 Primary Assembly

    Genomic

    1. NC_083383.1 Reference ASM3175591v1 Primary Assembly

      Range
      11749024..11753224 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_016029888.4 → XP_015885374.2  uncharacterized protein LOC107420827

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases