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    SGCD sarcoglycan delta [ Camelus bactrianus (Bactrian camel) ]

    Gene ID: 105080921, updated on 13-Mar-2024

    Summary

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    Gene symbol
    SGCD
    Gene description
    sarcoglycan delta
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Camelus bactrianus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Tylopoda; Camelidae; Camelus
    Orthologs
    human mouse all
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    Genomic context

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    See SGCD in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    102 current Ca_bactrianus_MBC_1.0 (GCF_000767855.1) Unplaced Scaffold NW_011517530.1 (3635450..4472486)

    NW_011517530.1Genomic Context describing neighboring genes Neighboring gene transfer RNA valine (anticodon CAC) Neighboring gene transfer RNA aspartic acid (anticodon AUC) Neighboring gene transfer RNA valine (anticodon CAC) Neighboring gene U6 spliceosomal RNA Neighboring gene transfer RNA alanine (anticodon GGC) Neighboring gene enhancer of rudimentary homolog Neighboring gene T cell immunoglobulin and mucin domain containing 4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_011517530 Unplaced Scaffold Reference Ca_bactrianus_MBC_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in cardiac muscle tissue development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in heart contraction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of sarcoglycan complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in sarcolemma IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    delta-sarcoglycan

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Camelus bactrianus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Ca_bactrianus_MBC_1.0 Primary Assembly

    Genomic

    1. NW_011517530.1 Reference Ca_bactrianus_MBC_1.0 Primary Assembly

      Range
      3635450..4472486
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_045506730.1 → XP_045362686.1  delta-sarcoglycan isoform X1

      UniProtKB/TrEMBL
      A0A9W3H2R9
      Conserved Domains (1) summary
      pfam04790
      Location:23 → 276
      Sarcoglycan_1; Sarcoglycan complex subunit protein

    2. XM_010970037.2 → XP_010968339.1  delta-sarcoglycan isoform X1

      See identical proteins and their annotated locations for XP_010968339.1

      UniProtKB/TrEMBL
      A0A9W3H2R9
      Conserved Domains (1) summary
      pfam04790
      Location:23 → 276
      Sarcoglycan_1; Sarcoglycan complex subunit protein

    3. XM_045506732.1 → XP_045362688.1  delta-sarcoglycan isoform X2

      UniProtKB/TrEMBL
      A0A9W3H8K2
      Conserved Domains (1) summary
      pfam04790
      Location:23 → 242
      Sarcoglycan_1; Sarcoglycan complex subunit protein

    4. XM_045506731.1 → XP_045362687.1  delta-sarcoglycan isoform X1

      UniProtKB/TrEMBL
      A0A9W3H2R9
      Conserved Domains (1) summary
      pfam04790
      Location:23 → 276
      Sarcoglycan_1; Sarcoglycan complex subunit protein

    5. XM_010970036.2 → XP_010968338.1  delta-sarcoglycan isoform X1

      See identical proteins and their annotated locations for XP_010968338.1

      UniProtKB/TrEMBL
      A0A9W3H2R9
      Conserved Domains (1) summary
      pfam04790
      Location:23 → 276
      Sarcoglycan_1; Sarcoglycan complex subunit protein

    6. XM_010970035.2 → XP_010968337.1  delta-sarcoglycan isoform X1

      See identical proteins and their annotated locations for XP_010968337.1

      UniProtKB/TrEMBL
      A0A9W3H2R9
      Conserved Domains (1) summary
      pfam04790
      Location:23 → 276
      Sarcoglycan_1; Sarcoglycan complex subunit protein
    Nucleotide Protein
    Heading Accession and Version

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