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    LOC103982925 transcription factor NIGTH1 [ Musa acuminata AAA Group (dessert banana) ]

    Gene ID: 103982925, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC103982925
    Gene description
    transcription factor NIGTH1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Musa acuminata AAA Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Zingiberales; Musaceae; Musa
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    Genomic context

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    See LOC103982925 in Genome Data Viewer
    Location:
    chromosome: BXJ1-4
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_05 current Cavendish_Baxijiao_AAA (GCF_036884655.1) BXJ1-4 NC_088330.1 (38379220..38381125)

    Chromosome BXJ1-4 - NC_088330.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC135585167 Neighboring gene serine/threonine-protein kinase SAPK10 Neighboring gene uncharacterized LOC135665060 Neighboring gene uncharacterized LOC135665046 Neighboring gene mitogen-activated protein kinase kinase kinase 5

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_088330.1 Chromosome BXJ1-4 Reference Cavendish_Baxijiao_AAA

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Transcriptome profiling of resistant and susceptible Cavendish banana roots following inoculation with Fusarium oxysporum f. sp. cubense tropical race 4. Li CY, et al. BMC Genomics, 2012 Aug 5. PMID 22863187, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor HHO3; transcription factor NIGTH1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036884655.1-RS_2024_05

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cavendish_Baxijiao_AAA

    Genomic

    1. NC_088330.1 Reference Cavendish_Baxijiao_AAA

      Range
      38379220..38381125
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009400015.3 → XP_009398290.2  transcription factor HHO3 isoform X1

    2. XM_009400016.3 → XP_009398291.2  transcription factor NIGTH1 isoform X2

    Nucleotide Protein
    Heading Accession and Version

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