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    SYT4 synaptotagmin 4 [ Geospiza fortis (medium ground-finch) ]

    Gene ID: 102032340, updated on 3-Aug-2024

    Summary

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    Gene symbol
    SYT4
    Gene description
    synaptotagmin 4
    See related
    Ensembl:ENSGFOG00000012768
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Geospiza fortis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Thraupidae; Geospiza
    Orthologs
    human mouse all
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    Genomic context

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    See SYT4 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    102 current GeoFor_1.0 (GCF_000277835.1) Unplaced Scaffold NW_005054365.1 (581074..596289, complement)

    NW_005054365.1Genomic Context describing neighboring genes Neighboring gene Ras like without CAAX 2 Neighboring gene SET binding protein 1 Neighboring gene uncharacterized LOC115948235

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_005054365 Unplaced Scaffold Reference GeoFor_1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables SNARE binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calcium-dependent phospholipid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables clathrin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phosphatidylserine binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in calcium-ion regulated exocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cellular response to calcium ion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of calcium ion-dependent exocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of dopamine secretion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vesicle fusion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in axon IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in synapse IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    synaptotagmin-4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Geospiza fortis Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GeoFor_1.0

    Genomic

    1. NW_005054365.1 Reference GeoFor_1.0

      Range
      581074..596289 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_014308290.2 → XP_014163765.1  synaptotagmin-4

      UniProtKB/TrEMBL
      A0A6I9Z821
      Related
      ENSGFOP00000018912.1, ENSGFOT00000019523.1
      Conserved Domains (2) summary
      cd08388
      Location:176 → 302
      C2A_Synaptotagmin-4-11; C2A domain first repeat present in Synaptotagmins 4 and 11
      cd08404
      Location:311 → 446
      C2B_Synaptotagmin-4; C2 domain second repeat present in Synaptotagmin 4
    Nucleotide Protein
    Heading Accession and Version

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