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    LOC101216377 pectinesterase [ Cucumis sativus (cucumber) ]

    Gene ID: 101216377, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC101216377
    Gene description
    pectinesterase
    Locus tag
    Csa_004290
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucumis sativus
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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    Genomic context

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    See LOC101216377 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current Cucumber_9930_V3 (GCF_000004075.3) 6 NC_026660.2 (28782651..28784796, complement)
    101 previous assembly ASM407v2 (GCF_000004075.2) 6 NC_026660.1 (26757023..26758968, complement)

    Chromosome 6 - NC_026660.2Genomic Context describing neighboring genes Neighboring gene homeobox-leucine zipper protein PROTODERMAL FACTOR 2 Neighboring gene CRIB domain-containing protein RIC10 Neighboring gene probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3B Neighboring gene cysteine-rich PDZ-binding protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables pectinesterase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables pectinesterase inhibitor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell wall modification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pectinesterase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cucumber_9930_V3 Primary Assembly

    Genomic

    1. NC_026660.2 Reference Cucumber_9930_V3 Primary Assembly

      Range
      28782651..28784796 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004134704.3 → XP_004134752.1  pectinesterase

      See identical proteins and their annotated locations for XP_004134752.1

      UniProtKB/TrEMBL
      A0A0A0KHV5
      Conserved Domains (1) summary
      PLN02301
      Location:1 → 555
      PLN02301; pectinesterase/pectinesterase inhibitor
    Nucleotide Protein
    Heading Accession and Version

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