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    LOC101206143 glucan endo-1,3-beta-glucosidase 8 [ Cucumis sativus (cucumber) ]

    Gene ID: 101206143, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC101206143
    Gene description
    glucan endo-1,3-beta-glucosidase 8
    Locus tag
    Csa_004042
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucumis sativus
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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    Genomic context

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    See LOC101206143 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current Cucumber_9930_V3 (GCF_000004075.3) 6 NC_026660.2 (24771200..24772996)
    101 previous assembly ASM407v2 (GCF_000004075.2) 6 NC_026660.1 (22737973..22739640)

    Chromosome 6 - NC_026660.2Genomic Context describing neighboring genes Neighboring gene probable WRKY transcription factor 13-like Neighboring gene uncharacterized LOC101206379 Neighboring gene tRNA(His) guanylyltransferase 1 Neighboring gene protein SLOW GREEN 1, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    glucan endo-1,3-beta-glucosidase 8

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cucumber_9930_V3 Primary Assembly

    Genomic

    1. NC_026660.2 Reference Cucumber_9930_V3 Primary Assembly

      Range
      24771200..24772996
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004141993.3 → XP_004142041.1  glucan endo-1,3-beta-glucosidase 8

      See identical proteins and their annotated locations for XP_004142041.1

      UniProtKB/TrEMBL
      A0A0A0KJ60
      Conserved Domains (2) summary
      smart00768
      Location:370 → 453
      X8; Possibly involved in carbohydrate binding
      cl23725
      Location:29 → 348
      Glyco_hydro; Glycosyl hydrolases
    Nucleotide Protein
    Heading Accession and Version

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