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    CSPG4 chondroitin sulfate proteoglycan 4 [ Pan paniscus (pygmy chimpanzee) ]

    Gene ID: 100973434, updated on 8-Mar-2024

    Summary

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    Gene symbol
    CSPG4
    Gene description
    chondroitin sulfate proteoglycan 4
    See related
    Ensembl:ENSPPAG00000029648
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pan paniscus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
    Orthologs
    human mouse all
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    Genomic context

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    See CSPG4 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current NHGRI_mPanPan1-v2.0_pri (GCF_029289425.2) 16 NC_073265.2 (64867979..64906630, complement)
    RS_2023_05 previous assembly NHGRI_mPanPan1-v1.1-0.1.freeze_pri (GCF_029289425.1) 15 NC_073264.1 (69030759..69070439, complement)

    Chromosome 16 - NC_073265.2Genomic Context describing neighboring genes Neighboring gene snurportin 1 Neighboring gene IMP U3 small nucleolar ribonucleoprotein 3 Neighboring gene sorting nexin 33 Neighboring gene uncharacterized LOC134729094 Neighboring gene ciliary microtubule associated protein 1C Neighboring gene dynamin-1-like Neighboring gene uncharacterized LOC103786168

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in anatomical structure morphogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in collagen-containing extracellular matrix IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chondroitin sulfate proteoglycan 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_029289425.2-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

    Genomic

    1. NC_073265.2 Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

      Range
      64867979..64906630 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_034939157.3 → XP_034795048.3  chondroitin sulfate proteoglycan 4

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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