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    LOC111580807 probable ATP-dependent RNA helicase DDX17 [ Amphiprion ocellaris (clown anemonefish) ]

    Gene ID: 111580807, updated on 18-Jun-2024

    Summary

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    Gene symbol
    LOC111580807
    Gene description
    probable ATP-dependent RNA helicase DDX17
    See related
    Ensembl:ENSAOCG00000003224
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Amphiprion ocellaris
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Pomacentridae; Amphiprion
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    Genomic context

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    See LOC111580807 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2023_03 current ASM2253959v1 (GCF_022539595.1) 19 NC_072784.1 (7296504..7308886, complement)
    101 previous assembly AmpOce1.0 (GCF_002776465.1) Unplaced Scaffold NW_019373460.1 (164210..176579)

    Chromosome 19 - NC_072784.1Genomic Context describing neighboring genes Neighboring gene MICAL-like protein 1 Neighboring gene RNA polymerase II, I and III subunit F Neighboring gene ADP-ribosylation factor-binding protein GGA1 Neighboring gene transmembrane protein 184B-like Neighboring gene casein kinase I

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in alternative mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable ATP-dependent RNA helicase DDX17

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_022539595.1-RS_2023_03

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM2253959v1 Primary Assembly

    Genomic

    1. NC_072784.1 Reference ASM2253959v1 Primary Assembly

      Range
      7296504..7308886 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023288705.3 → XP_023144473.2  probable ATP-dependent RNA helicase DDX17 isoform X2

      Related
      ENSAOCP00000078538.1, ENSAOCT00000063033.1

    2. XM_023288704.3 → XP_023144472.2  probable ATP-dependent RNA helicase DDX17 isoform X1

      Related
      ENSAOCP00000044123.1, ENSAOCT00000060942.1

    3. XM_035956552.2 → XP_035812445.1  probable ATP-dependent RNA helicase DDX17 isoform X3

      Related
      ENSAOCP00000019673.2, ENSAOCT00000015015.2
      Conserved Domains (1) summary
      PTZ00110
      Location:22 → 474
      PTZ00110; helicase; Provisional
    Nucleotide Protein
    Heading Accession and Version

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