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    setx senataxin [ Ictalurus punctatus (channel catfish) ]

    Gene ID: 108279159, updated on 10-Oct-2024

    Summary

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    Gene symbol
    setx
    Gene description
    senataxin
    See related
    EnsemblRapid:ENSIPUG00020030274
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ictalurus punctatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
    Orthologs
    human zebrafish all
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    Genomic context

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    See setx in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    RS_2023_03 current Coco_2.0 (GCF_001660625.3) 18 NC_030433.2 (1734515..1761232)
    101 previous assembly IpCoco_1.2 (GCF_001660625.2) 18 NC_030433.1 (1702647..1727052)

    Chromosome 18 - NC_030433.2Genomic Context describing neighboring genes Neighboring gene mitoguardin 2 Neighboring gene dolichyldiphosphatase 1 Neighboring gene netrin g2b Neighboring gene Rap guanine nucleotide exchange factor (GEF) 1b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription termination site sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in termination of RNA polymerase II transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nuclear body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable helicase senataxin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Coco_2.0 Primary Assembly

    Genomic

    1. NC_030433.2 Reference Coco_2.0 Primary Assembly

      Range
      1734515..1761232
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017493164.3 → XP_017348653.1  probable helicase senataxin isoform X1

      UniProtKB/TrEMBL
      A0A2D0T146, W5UB54
      Related
      ENSIPUP00020056669.1, ENSIPUT00020073223.1

    2. XM_017493167.3 → XP_017348656.1  probable helicase senataxin isoform X2

      UniProtKB/TrEMBL
      A0A2D0T1I5, W5UB54
      Related
      ENSIPUP00020056673.1, ENSIPUT00020073227.1

    3. XM_047161712.2 → XP_047017668.1  probable helicase senataxin isoform X3

      UniProtKB/TrEMBL
      A0A979FBT6
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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