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    AADACL2-AS1 AADACL2 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 101928142, updated on 17-Sep-2024

    Summary

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    Official Symbol
    AADACL2-AS1provided by HGNC
    Official Full Name
    AADACL2 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:50301
    See related
    AllianceGenome:HGNC:50301
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in testis (RPKM 1.2), placenta (RPKM 0.2) and 2 other tissues See more
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    Genomic context

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    See AADACL2-AS1 in Genome Data Viewer
    Location:
    3q25.1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (151751179..151928175, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (154518826..154696034, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (151468967..151645963, complement)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene immunoglobulin superfamily member 10 Neighboring gene MPRA-validated peak4860 silencer Neighboring gene long intergenic non-protein coding RNA 2066 Neighboring gene microRNA 5186 Neighboring gene uncharacterized LOC105374157 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr3:151467502-151468701 Neighboring gene arylacetamide deacetylase like 2 Neighboring gene arylacetamide deacetylase pseudogene 1 Neighboring gene arylacetamide deacetylase Neighboring gene uncharacterized LOC105374159 Neighboring gene MPRA-validated peak4862 silencer Neighboring gene uncharacterized LOC107986047 Neighboring gene succinate receptor 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20702 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20703 Neighboring gene long intergenic non-protein coding RNA 2917 Neighboring gene uncharacterized LOC101928166 Neighboring gene Sharpr-MPRA regulatory region 12239

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Association of IFIH1 and other autoimmunity risk alleles with selective IgA deficiency. Ferreira RC, et al. Nat Genet, 2010 Sep. PMID 20694011

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    EBI GWAS Catalog

    Description
    Association of IFIH1 and other autoimmunity risk alleles with selective IgA deficiency.
    EBI GWAS Catalog

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_110202.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      AC069067, DB454604

    2. NR_110203.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an internal exon resulting in a shorter transcript compared to variant 1.
      Source sequence(s)
      AC068647, HY022483, HY205836

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

      Range
      151751179..151928175 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 ALT_REF_LOCI_1

    Genomic

    1. NW_003315913.1 Reference GRCh38.p14 ALT_REF_LOCI_1

      Range
      172352..176309 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060927.1 Alternate T2T-CHM13v2.0

      Range
      154518826..154696034 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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    Research Materials